NCBI C++ ToolKit
Classes | Macros | Functions
alnread.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <objtools/readers/aln_formats.hpp>
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Classes

struct  SLineInfo
 
class  CSequenceInfo
 
struct  SAlignmentFile
 

Macros

#define ALIGNMENT_CALLBACK
 

Functions

bool ReadAlignmentFile (istream &istr, bool gen_local_ids, bool use_nexus_info, CSequenceInfo &sequence_info, SAlignmentFile &alignmentInfo, ILineErrorListener *pErrorListener=nullptr)
 
bool ReadAlignmentFile (istream &istr, CSequenceInfo &sequenceInfo, SAlignmentFile &alignmentInfo)
 
bool ReadAlignmentFile (istream &istr, EAlignFormat &, CSequenceInfo &sequenceInfo, SAlignmentFile &alignmentInfo)
 

Macro Definition Documentation

◆ ALIGNMENT_CALLBACK

#define ALIGNMENT_CALLBACK

Definition at line 39 of file alnread.hpp.

Function Documentation

◆ ReadAlignmentFile() [1/3]

bool ReadAlignmentFile ( istream &  istr,
bool  gen_local_ids,
bool  use_nexus_info,
CSequenceInfo sequence_info,
SAlignmentFile alignmentInfo,
ILineErrorListener pErrorListener = nullptr 
)

◆ ReadAlignmentFile() [2/3]

bool ReadAlignmentFile ( istream &  istr,
CSequenceInfo sequenceInfo,
SAlignmentFile alignmentInfo 
)

Definition at line 106 of file alnread.cpp.

References dummy, and ReadAlignmentFile().

◆ ReadAlignmentFile() [3/3]

bool ReadAlignmentFile ( istream &  istr,
EAlignFormat alignFormat,
CSequenceInfo sequenceInfo,
SAlignmentFile alignmentInfo 
)
Modified on Wed Apr 17 13:09:19 2024 by modify_doxy.py rev. 669887