analyze-shift.cpp File Reference

#include <ncbi_pch.hpp>
#include <sstream>
#include <iomanip>
#include <cstdlib>
#include <iostream>
#include <corelib/ncbistd.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbifile.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <serial/objostr.hpp>
#include <serial/objectio.hpp>
#include <serial/streamiter.hpp>
#include <util/compress/stream_util.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objects/variation/Variation.hpp>
#include <objects/variation/VariantPlacement.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/misc/sequence_macros.hpp>
#include <util/line_reader.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objtools/data_loaders/blastdb/bdbloader.hpp>
#include <connect/services/neticache_client.hpp>
#include <corelib/rwstream.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objtools/variation/variation_utils.hpp>
#include <misc/hgvs/hgvs_reader.hpp>
#include <misc/hgvs/variation_util2.hpp>
#include <objects/genomecoll/genome_collection__.hpp>
#include <objects/genomecoll/genomic_collections_cli.hpp>

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Classes
class	CAnalyzeShiftApp

Functions
	USING_SCOPE (objects)
int	main (int argc, const char *argv[])

Variables
	USING_NCBI_SCOPE

Function Documentation

main()

int main	(	int	argc,
		const char *	argv[]
	)

Definition at line 266 of file analyze-shift.cpp.

References CNcbiApplicationAPI::AppMain().

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 76 of file analyze-shift.cpp.