apply_rna_its_dlg.cpp File Reference

#include <ncbi_pch.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/align_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objtools/alnmgr/aln_container.hpp>
#include <objtools/edit/cds_fix.hpp>
#include <gui/packages/pkg_sequence_edit/apply_rna_its_dlg.hpp>
#include <gui/packages/pkg_sequence_edit/featedit_util.hpp>
#include <gui/packages/pkg_sequence_edit/miscedit_util.hpp>
#include <gui/objutils/cmd_create_feat.hpp>
#include <gui/objutils/cmd_propagate_feat.hpp>
#include <gui/core/selection_service_impl.hpp>
#include <gui/core/project_service.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/widgets/data/report_dialog.hpp>
#include <util/static_map.hpp>
#include <wx/textctrl.h>
#include <wx/arrstr.h>
#include <wx/sizer.h>
#include <wx/radiobox.h>
#include <wx/checkbox.h>
#include <wx/choice.h>
#include <wx/msgdlg.h>
#include <wx/valgen.h>
#include <wx/button.h>
#include <wx/event.h>

Include dependency graph for apply_rna_its_dlg.cpp:

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Typedefs
typedef SStaticPair< const char *, CApplyRNAITSDlg::ERNA_ITSType >	TITSLabelPair
typedef CStaticArrayMap< string, CApplyRNAITSDlg::ERNA_ITSType >	TITSMap
typedef SStaticPair< const char *, CApplyRNAITSDlg::ERNA_IGSType >	TIGSLabelPair
typedef CStaticArrayMap< string, CApplyRNAITSDlg::ERNA_IGSType >	TIGSMap

Functions
	USING_SCOPE (ncbi::objects)
	DEFINE_STATIC_ARRAY_MAP (TITSMap, sm_ITSMap, s_Rna_ITSStrings)
	DEFINE_STATIC_ARRAY_MAP (TIGSMap, sm_IGSMap, s_Rna_IGSStrings)

Variables
static const TITSLabelPair	s_Rna_ITSStrings []
static const TIGSLabelPair	s_Rna_IGSStrings []
static const char *	kApplyChoice = "ApplyRNA_ITS"

Typedef Documentation

TIGSLabelPair

typedef SStaticPair<const char*, CApplyRNAITSDlg::ERNA_IGSType> TIGSLabelPair

Definition at line 104 of file apply_rna_its_dlg.cpp.

TIGSMap

typedef CStaticArrayMap<string, CApplyRNAITSDlg::ERNA_IGSType> TIGSMap

Definition at line 112 of file apply_rna_its_dlg.cpp.

TITSLabelPair

typedef SStaticPair<const char*, CApplyRNAITSDlg::ERNA_ITSType> TITSLabelPair

Definition at line 63 of file apply_rna_its_dlg.cpp.

TITSMap

typedef CStaticArrayMap<string, CApplyRNAITSDlg::ERNA_ITSType> TITSMap

Definition at line 81 of file apply_rna_its_dlg.cpp.

Function Documentation

DEFINE_STATIC_ARRAY_MAP() [1/2]

DEFINE_STATIC_ARRAY_MAP	(	TIGSMap	,
		sm_IGSMap	,
		s_Rna_IGSStrings
	)

DEFINE_STATIC_ARRAY_MAP() [2/2]

DEFINE_STATIC_ARRAY_MAP	(	TITSMap	,
		sm_ITSMap	,
		s_Rna_ITSStrings
	)

USING_SCOPE()

USING_SCOPE

(

ncbi::objects

)

Variable Documentation

kApplyChoice

const char* kApplyChoice = "ApplyRNA_ITS"

static

Definition at line 421 of file apply_rna_its_dlg.cpp.

Referenced by CApplyRNAITSDlg::LoadSettings(), and CApplyRNAITSDlg::SaveSettings().

s_Rna_IGSStrings

const TIGSLabelPair s_Rna_IGSStrings[]

static

Initial value:

= {
    {"",                        CApplyRNAITSDlg::eRNA_IGS_unknown},
    {"16S rRNA",                CApplyRNAITSDlg::eRNA_IGS_16S},
    {"16S-23S rRNA IGS",        CApplyRNAITSDlg::eRNA_IGS_16S_23S_Igs},
    {"23S rRNA",                CApplyRNAITSDlg::eRNA_IGS_23S},
}

Definition at line 105 of file apply_rna_its_dlg.cpp.

s_Rna_ITSStrings

const TITSLabelPair s_Rna_ITSStrings[]

static

Initial value:

= { 
        {"",                            CApplyRNAITSDlg::eRNA_ITS_unknown},
        {"18S rRNA",                    CApplyRNAITSDlg::eRNA_ITS_18S},
        {"18S small subunit rRNA",      CApplyRNAITSDlg::eRNA_ITS_18S_small},
        {"25S large subunit rRNA",      CApplyRNAITSDlg::eRNA_ITS_25S_large},
        {"25S rRNA",                    CApplyRNAITSDlg::eRNA_ITS_25S},
        {"26S large subunit rRNA",      CApplyRNAITSDlg::eRNA_ITS_26S_large},
        {"26S rRNA",                    CApplyRNAITSDlg::eRNA_ITS_26S},
        {"28S large subunit rRNA",      CApplyRNAITSDlg::eRNA_ITS_28S_large},
        {"28S rRNA",                    CApplyRNAITSDlg::eRNA_ITS_28S},
        {"5.8S rRNA",                   CApplyRNAITSDlg::eRNA_ITS_58S},
        {"ITS1",                        CApplyRNAITSDlg::eRNA_ITS_Its1},
        {"ITS2",                        CApplyRNAITSDlg::eRNA_ITS_Its2},
        {"large subunit rRNA",          CApplyRNAITSDlg::eRNA_ITS_large},
        {"small subunit rRNA",          CApplyRNAITSDlg::eRNA_ITS_small},
}

Definition at line 64 of file apply_rna_its_dlg.cpp.