asn_index.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <objtools/data_loaders/asn_cache/asn_cache_export.h>
#include <db/bdb/bdb_file.hpp>

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Classes
class	CAsnIndex
	This is a simple BDB structure holding information about a given accession and its indexed location. More...
struct	CAsnIndex::SIndexInfo

Functions
size_t	IndexABioseq (const objects::CBioseq &bioseq, CAsnIndex &index, CAsnIndex::TTimestamp timestamp, CAsnIndex::TChunkId chunk_id, CAsnIndex::TOffset offset, CAsnIndex::TSize size)
void	BioseqIndexData (const objects::CBioseq &bioseq, CAsnIndex::TGi &gi, CAsnIndex::TSeqLength &seq_length, CAsnIndex::TTaxId &taxid)

Function Documentation

BioseqIndexData()

void BioseqIndexData	(	const objects::CBioseq &	bioseq,
		CAsnIndex::TGi &	gi,
		CAsnIndex::TSeqLength &	seq_length,
		CAsnIndex::TTaxId &	taxid
	)

Definition at line 240 of file asn_index.cpp.

References GI_TO, ITERATE, TAX_ID_TO, and ZERO_TAX_ID.

Referenced by IndexABioseq(), and SBlobInserter::operator()().

IndexABioseq()

size_t IndexABioseq	(	const objects::CBioseq &	bioseq,
		CAsnIndex &	index,
		CAsnIndex::TTimestamp	timestamp,
		CAsnIndex::TChunkId	chunk_id,
		CAsnIndex::TOffset	offset,
		CAsnIndex::TSize	size
	)

Definition at line 197 of file asn_index.cpp.

References BioseqIndexData(), CAsnIndex::e_main, eBDB_Ok, eUnknown, CBDB_RawFile::GetFileName(), CAsnIndex::GetIndexType(), GetNormalizedSeqId(), ITERATE, NCBI_THROW, offset, CAsnIndex::SetChunkId(), CAsnIndex::SetGi(), CAsnIndex::SetOffset(), CAsnIndex::SetSeqId(), CAsnIndex::SetSeqLength(), CAsnIndex::SetSize(), CAsnIndex::SetTaxId(), CAsnIndex::SetTimestamp(), CAsnIndex::SetVersion(), ncbi::grid::netcache::search::fields::size, string, CBDB_File::UpdateInsert(), and dtl::version.

Referenced by CDumpASNIndex::x_BuildIndexAndSeqIdInfo(), and CPrimeCacheApplication::x_ExtractAndIndex().