#include <ncbi_pch.hpp>
#include <common/ncbi_source_ver.h>
#include <corelib/ncbiapp.hpp>
#include <misc/data_loaders_util/data_loaders_util.hpp>
#include <misc/discrepancy/discrepancy.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objmgr/object_manager.hpp>
#include <serial/objistr.hpp>
#include <serial/objostr.hpp>
#include <util/format_guess.hpp>
#include <util/compress/stream_util.hpp>
#include <util/line_reader.hpp>
#include <corelib/rwstream.hpp>
#include <util/multi_writer.hpp>

Include dependency graph for asndisc.cpp:

Go to the SVN repository for this file.

Classes
class	CDiscRepApp

class	CDiscRepArgDescriptions

Functions
	USING_SCOPE (NDiscrepancy)

	USING_SCOPE (objects)

static void	PrintMsg (EDiagSev sev, const string &msg)

static unique_ptr< CObjectIStream >	OpenUncompressedStream (const string &fname, bool &compressed)

int	main (int argc, const char *argv[])

Variables
	USING_NCBI_SCOPE

Function Documentation

◆ main()

int main	(	int	argc,
		const char *	argv[]
	)

Definition at line 563 of file asndisc.cpp.

References CNcbiApplicationAPI::AppMain(), int, and NStr::Split().

◆ OpenUncompressedStream()

static unique_ptr<CObjectIStream> OpenUncompressedStream	(	const string &	fname,
		bool &	compressed
	)

static

Definition at line 188 of file asndisc.cpp.

References CFormatGuess::eBinaryASN, CCompressStream::eBZip2, CFormatGuess::eBZip2, CFormatGuess::eGZip, CCompressStream::eGZipFile, CCompressStream::eLZO, CFormatGuess::eLzo, CCompressStream::eNone, eSerial_AsnBinary, eSerial_AsnText, eTakeOwnership, CFormatGuess::eTextASN, CCompressStream::fDefault, CFormatGuess::Format(), format, and CObjectIStream::Open().

Referenced by CDiscRepApp::x_ProcessFile().

◆ PrintMsg()

static void PrintMsg	(	EDiagSev	sev,
		const string &	msg
	)

static

Definition at line 120 of file asndisc.cpp.

References eDiag_Error, and msg().

Referenced by CDiscRepApp::Run(), and CDiscRepApp::x_ProcessAll().

◆ USING_SCOPE() [1/2]

USING_SCOPE ( NDiscrepancy )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 48 of file asndisc.cpp.

Classes

Functions

Variables