NCBI C++ ToolKit
Macros | Functions | Variables
bamgraph.cpp File Reference
#include <ncbi_pch.hpp>
#include <sra/readers/bam/bamgraph.hpp>
#include <sra/readers/bam/bamread.hpp>
#include <sra/readers/bam/bamindex.hpp>
#include <sra/error_codes.hpp>
#include <objects/general/general__.hpp>
#include <objects/seq/seq__.hpp>
#include <objects/seqres/seqres__.hpp>
#include <objects/seqloc/seqloc__.hpp>
#include <serial/serial.hpp>
#include <serial/typeinfo.hpp>
#include <cmath>
#include <numeric>
+ Include dependency graph for bamgraph.cpp:

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Macros

#define NCBI_USE_ERRCODE_X   BAM2Graph
 
#define DEFAULT_BAI_SUFFIX   ".bai"
 

Functions

 NCBI_DEFINE_ERR_SUBCODE_X (6)
 
static void sx_SetTitle (CSeq_graph &graph, CSeq_annot &annot, string title, string name)
 

Variables

static const int kDefaultOutlierMax_Byte = 50
 
static const int kDefaultOutlierMax_Int = 1000000
 
static const Uint8 kDefaultMinMapQuality = 4
 

Macro Definition Documentation

◆ DEFAULT_BAI_SUFFIX

#define DEFAULT_BAI_SUFFIX   ".bai"

Definition at line 59 of file bamgraph.cpp.

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X   BAM2Graph

Definition at line 49 of file bamgraph.cpp.

Function Documentation

◆ NCBI_DEFINE_ERR_SUBCODE_X()

NCBI_DEFINE_ERR_SUBCODE_X ( )

◆ sx_SetTitle()

static void sx_SetTitle ( CSeq_graph graph,
CSeq_annot annot,
string  title,
string  name 
)
static

Variable Documentation

◆ kDefaultMinMapQuality

const Uint8 kDefaultMinMapQuality = 4
static

Definition at line 58 of file bamgraph.cpp.

Referenced by CBam2Seq_graph::GetMinMapQuality().

◆ kDefaultOutlierMax_Byte

const int kDefaultOutlierMax_Byte = 50
static

Definition at line 56 of file bamgraph.cpp.

Referenced by CBam2Seq_graph::GetOutlierMax().

◆ kDefaultOutlierMax_Int

const int kDefaultOutlierMax_Int = 1000000
static

Definition at line 57 of file bamgraph.cpp.

Referenced by CBam2Seq_graph::GetOutlierMax().

Modified on Sun Apr 14 05:27:14 2024 by modify_doxy.py rev. 669887