#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>
#include <objects/general/general__.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seq/seq__.hpp>
#include <objects/seqres/seqres__.hpp>
#include <objmgr/impl/data_source.hpp>
#include <objmgr/impl/tse_loadlock.hpp>
#include <objmgr/impl/tse_chunk_info.hpp>
#include <objmgr/data_loader_factory.hpp>
#include <corelib/plugin_manager_impl.hpp>
#include <corelib/plugin_manager_store.hpp>
#include <sra/data_loaders/bam/bamloader.hpp>
#include <sra/data_loaders/bam/impl/bamloader_impl.hpp>

Include dependency graph for bamloader.cpp:

Go to the SVN repository for this file.

Classes
class	CLoaderFilter

class	CRevoker

class	CBAM_DataLoaderCF

Functions
	NCBI_PARAM_DECL (string, BAM, DIR_PATH)

	NCBI_PARAM_DEF_EX (string, BAM, DIR_PATH, "", eParam_NoThread, BAM_DIR_PATH)

	NCBI_PARAM_DECL (string, BAM, BAM_NAME)

	NCBI_PARAM_DEF_EX (string, BAM, BAM_NAME, "", eParam_NoThread, BAM_BAM_NAME)

	NCBI_PARAM_DECL (string, BAM, INDEX_NAME)

	NCBI_PARAM_DEF_EX (string, BAM, INDEX_NAME, "", eParam_NoThread, BAM_INDEX_NAME)

	USING_SCOPE (objects)

void	DataLoaders_Register_BAM (void)

const string	kDataLoader_Bam_DriverName ("bam")

void	NCBI_EntryPoint_DataLoader_Bam (CPluginManager< CDataLoader >::TDriverInfoList &info_list, CPluginManager< CDataLoader >::EEntryPointRequest method)

void	NCBI_EntryPoint_xloader_bam (CPluginManager< objects::CDataLoader >::TDriverInfoList &info_list, CPluginManager< objects::CDataLoader >::EEntryPointRequest method)

Variables
	BEGIN_LOCAL_NAMESPACE

static CSafeStatic< CRevoker >	s_Revoker (CSafeStaticLifeSpan(CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long))

	END_LOCAL_NAMESPACE

Function Documentation

◆ DataLoaders_Register_BAM()

void DataLoaders_Register_BAM ( void )

Definition at line 362 of file bamloader.cpp.

References NCBI_EntryPoint_DataLoader_Bam().

◆ kDataLoader_Bam_DriverName()

const string kDataLoader_Bam_DriverName ( "bam" )

◆ NCBI_EntryPoint_DataLoader_Bam()

void NCBI_EntryPoint_DataLoader_Bam	(	CPluginManager< CDataLoader >::TDriverInfoList &	info_list,
		CPluginManager< CDataLoader >::EEntryPointRequest	method
	)

Definition at line 400 of file bamloader.cpp.

References CHostEntryPointImpl< TClassFactory >::NCBI_EntryPointImpl().

Referenced by DataLoaders_Register_BAM(), and NCBI_EntryPoint_xloader_bam().

◆ NCBI_EntryPoint_xloader_bam()

void NCBI_EntryPoint_xloader_bam	(	CPluginManager< objects::CDataLoader >::TDriverInfoList &	info_list,
		CPluginManager< objects::CDataLoader >::EEntryPointRequest	method
	)

Definition at line 408 of file bamloader.cpp.

References NCBI_EntryPoint_DataLoader_Bam().

◆ NCBI_PARAM_DECL() [1/3]

NCBI_PARAM_DECL	(	string	,
		BAM	,
		BAM_NAME
	)

◆ NCBI_PARAM_DECL() [2/3]

NCBI_PARAM_DECL	(	string	,
		BAM	,
		DIR_PATH
	)

◆ NCBI_PARAM_DECL() [3/3]

NCBI_PARAM_DECL	(	string	,
		BAM	,
		INDEX_NAME
	)

◆ NCBI_PARAM_DEF_EX() [1/3]

NCBI_PARAM_DEF_EX	(	string	,
		BAM	,
		BAM_NAME	,
		""	,
		eParam_NoThread	,
		BAM_BAM_NAME
	)

◆ NCBI_PARAM_DEF_EX() [2/3]

NCBI_PARAM_DEF_EX	(	string	,
		BAM	,
		DIR_PATH	,
		""	,
		eParam_NoThread	,
		BAM_DIR_PATH
	)

◆ NCBI_PARAM_DEF_EX() [3/3]

NCBI_PARAM_DEF_EX	(	string	,
		BAM	,
		INDEX_NAME	,
		""	,
		eParam_NoThread	,
		BAM_INDEX_NAME
	)

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ BEGIN_LOCAL_NAMESPACE

BEGIN_LOCAL_NAMESPACE

Definition at line 57 of file bamloader.cpp.

◆ END_LOCAL_NAMESPACE

END_LOCAL_NAMESPACE

Definition at line 78 of file bamloader.cpp.

◆ s_Revoker

CSafeStatic<CRevoker> s_Revoker(CSafeStaticLifeSpan( CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long)) ( CSafeStaticLifeSpan( CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long) )

static

Classes

Functions

Variables