bed_column_data.hpp

Go to the documentation of this file.

Go to the SVN repository for this file.

#ifndef _BED_COLUMN_DATA_HPP_
#define _BED_COLUMN_DATA_HPP_
/*
 * $Id: bed_column_data.hpp 93579 2021-05-01 20:54:52Z stakhovv $
 *
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Authors: Frank Ludwig
 *
 */
 
#include <corelib/ncbistd.hpp>
#include <objtools/readers/bed_reader.hpp>
#include "bed_column_data.hpp"
 
BEGIN_NCBI_SCOPE
BEGIN_SCOPE(objects);
 
//  ============================================================================
class CBedColumnData
//  ============================================================================
{
 
public:
    CBedColumnData(
        const CReaderBase::TReaderLine&,
        int flags =0);
 
    const string&
    operator[](
        size_t) const;
 
    unsigned int
    LineNo() const { return mLineNo; };
 
    size_t
    ColumnCount() const { return mData.size(); };
 
protected:
    void xSplitColumns(
        const string&);
    void xCleanColumnValues();
    void xAddDefaultColumns();
 
    vector<string> mData;
    unsigned int mLineNo;
 
    string mColumnSeparator;
    NStr::TSplitFlags mColumnSplitFlags;
};
 
END_SCOPE(objects)
END_NCBI_SCOPE
 
#endif // _BED_COLUMN_DATA_HPP_