bgzf.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <corelib/ncbifile.hpp>
#include <util/simple_buffer.hpp>
#include <sra/readers/bam/vdbfile.hpp>
#include <sra/readers/bam/cache_with_lock.hpp>

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Classes
class	CPagedFilePage
class	CPagedFile
class	CBGZFException
struct	SBamUtil
union	SBamUtil::UFloatUint4
class	CBGZFPos
class	CBGZFBlock
class	CBGZFFile
class	CBGZFStream

Macros
#define	USE_RANGE_CACHE   1

Typedefs
typedef pair< CBGZFPos, CBGZFPos >	CBGZFRange

Functions
ostream &	operator<< (ostream &out, const CBGZFPos &p)
ostream &	operator<< (ostream &out, const CBGZFRange &r)

Macro Definition Documentation

USE_RANGE_CACHE

#define USE_RANGE_CACHE   1

Definition at line 97 of file bgzf.hpp.

Typedef Documentation

CBGZFRange

typedef pair<CBGZFPos, CBGZFPos> CBGZFRange

Definition at line 272 of file bgzf.hpp.

Function Documentation

operator<<() [1/2]

ostream& operator<<	(	ostream &	out,
		const CBGZFPos &	p
	)

Definition at line 337 of file bgzf.cpp.

References CBGZFPos::GetByteOffset(), CBGZFPos::GetFileBlockPos(), and out().

operator<<() [2/2]

ostream& operator<<	(	ostream &	out,
		const CBGZFRange &	r
	)

Definition at line 343 of file bgzf.cpp.

References out(), and r().