NCBI C++ ToolKit
Classes | Functions | Variables
biosample_chk.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>
#include <corelib/ncbistre.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbiutil.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <serial/objectio.hpp>
#include <connect/ncbi_core_cxx.hpp>
#include <connect/ncbi_util.h>
#include <connect/ncbi_http_session.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/seqfeat/OrgName.hpp>
#include <objects/seqfeat/OrgMod.hpp>
#include <objects/seqfeat/PCRReactionSet.hpp>
#include <objects/seqfeat/PCRReaction.hpp>
#include <objects/seqfeat/PCRPrimer.hpp>
#include <objects/seqfeat/PCRPrimerSet.hpp>
#include <objects/seqfeat/PCRPrimerName.hpp>
#include <objects/seqfeat/PCRPrimerSeq.hpp>
#include <objects/seq/Pubdesc.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/pub/Pub_equiv.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/biblio/Cit_gen.hpp>
#include <objects/biblio/Auth_list.hpp>
#include <objects/biblio/Author.hpp>
#include <objects/biblio/Affil.hpp>
#include <objects/general/Person_id.hpp>
#include <objects/general/Name_std.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objects/submit/Submit_block.hpp>
#include <objects/submit/Contact_info.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objtools/cleanup/cleanup.hpp>
#include <objects/seqtable/SeqTable_multi_data.hpp>
#include <objects/seqtable/SeqTable_column_info.hpp>
#include <util/line_reader.hpp>
#include <util/compress/stream_util.hpp>
#include <util/format_guess.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_descr_ci.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <misc/jsonwrapp/jsonwrapp.hpp>
#include <misc/xmlwrapp/xmlwrapp.hpp>
#include <misc/biosample_util/biosample_util.hpp>
#include <misc/biosample_util/struc_table_column.hpp>
#include <common/test_assert.h>
+ Include dependency graph for biosample_chk.cpp:

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Classes

class  CBiosampleHandler
 
class  CBiosampleStatusReport
 
class  CBiosampleChkApp
 

Functions

static bool s_IsEmptyBioSource (const CSeqdesc &src)
 
int main (int argc, const char *argv[])
 

Variables

const char * BIOSAMPLE_CHK_APP_VER = "1.0"
 

Function Documentation

◆ main()

int main ( int  argc,
const char *  argv[] 
)

Definition at line 1431 of file biosample_chk.cpp.

References CNcbiApplicationAPI::AppMain(), and eDS_Default.

◆ s_IsEmptyBioSource()

static bool s_IsEmptyBioSource ( const CSeqdesc src)
static

Variable Documentation

◆ BIOSAMPLE_CHK_APP_VER

const char* BIOSAMPLE_CHK_APP_VER = "1.0"

Definition at line 116 of file biosample_chk.cpp.

Modified on Sat Jul 13 13:34:19 2024 by modify_doxy.py rev. 669887