blast_input.hpp File Reference

Interface for converting sources of sequence data into blast sequence input. More...

#include <corelib/ncbistd.hpp>
#include <algo/blast/api/sseqloc.hpp>
#include <algo/blast/blastinput/blast_scope_src.hpp>

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Classes
class	CBlastInputSourceConfig
	Class that centralizes the configuration data for sequences to be converted. More...
class	CInputException
	Defines user input exceptions. More...
class	CBlastInputSource
	Base class representing a source of biological sequences. More...
class	CBlastInput
	Generalized converter from an abstract source of biological sequence data to collections of blast input. More...
class	CBlastBioseqMaker
	Auxiliary class for creating Bioseqs given SeqIds. More...
class	CBlastInputSourceOMF
class	CBlastInputOMF

Detailed Description

Interface for converting sources of sequence data into blast sequence input.

Definition in file blast_input.hpp.