RPS BLAST structure definitions. More...
#include <algo/blast/core/ncbi_std.h>
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Classes | |
| struct | BlastRPSLookupFileHeader |
| header of RPS blast '.loo' file More... | |
| struct | BlastRPSProfileHeader |
| header of RPS blast '.rps' file More... | |
| struct | BlastRPSFreqRatiosHeader |
| struct | BlastRPSAuxInfo |
| information derived from RPS blast '.aux' file More... | |
| struct | BlastRPSInfo |
| The RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner). More... | |
Macros | |
| #define | RPS_MAGIC_NUM 0x1e16 |
| RPS blast version number. More... | |
| #define | RPS_MAGIC_NUM_28 0x1e17 |
| Version number for 28-letter alphabet. More... | |
| #define | NUM_EXPANSION_WORDS 3 |
| Intentionally unused words in .loo file. More... | |
| #define | FREQ_RATIO_SCALE 1000000000 |
| header for RPS blast frequency ratios ('.freq') file More... | |
Typedefs | |
| typedef struct BlastRPSLookupFileHeader | BlastRPSLookupFileHeader |
| header of RPS blast '.loo' file More... | |
| typedef struct BlastRPSProfileHeader | BlastRPSProfileHeader |
| header of RPS blast '.rps' file More... | |
| typedef struct BlastRPSFreqRatiosHeader | BlastRPSFreqRatiosHeader |
| typedef struct BlastRPSAuxInfo | BlastRPSAuxInfo |
| information derived from RPS blast '.aux' file More... | |
| typedef struct BlastRPSInfo | BlastRPSInfo |
| The RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner). More... | |
Detailed Description
RPS BLAST structure definitions.
Definition in file blast_rps.h.
Macro Definition Documentation
◆ FREQ_RATIO_SCALE
| #define FREQ_RATIO_SCALE 1000000000 |
header for RPS blast frequency ratios ('.freq') file
Definition at line 83 of file blast_rps.h.
◆ NUM_EXPANSION_WORDS
| #define NUM_EXPANSION_WORDS 3 |
Intentionally unused words in .loo file.
Definition at line 45 of file blast_rps.h.
◆ RPS_MAGIC_NUM
| #define RPS_MAGIC_NUM 0x1e16 |
RPS blast version number.
Definition at line 43 of file blast_rps.h.
◆ RPS_MAGIC_NUM_28
| #define RPS_MAGIC_NUM_28 0x1e17 |
Version number for 28-letter alphabet.
Definition at line 44 of file blast_rps.h.
Typedef Documentation
◆ BlastRPSAuxInfo
| typedef struct BlastRPSAuxInfo BlastRPSAuxInfo |
information derived from RPS blast '.aux' file
◆ BlastRPSFreqRatiosHeader
| typedef struct BlastRPSFreqRatiosHeader BlastRPSFreqRatiosHeader |
◆ BlastRPSInfo
| typedef struct BlastRPSInfo BlastRPSInfo |
The RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner).
◆ BlastRPSLookupFileHeader
| typedef struct BlastRPSLookupFileHeader BlastRPSLookupFileHeader |
header of RPS blast '.loo' file
◆ BlastRPSProfileHeader
| typedef struct BlastRPSProfileHeader BlastRPSProfileHeader |
header of RPS blast '.rps' file
