NCBI C++ ToolKit
Classes | Functions | Variables
blastn_app.cpp File Reference

BLASTN command line application. More...

#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <algo/blast/api/local_blast.hpp>
#include <algo/blast/api/remote_blast.hpp>
#include <algo/blast/blastinput/blast_fasta_input.hpp>
#include <algo/blast/blastinput/blastn_args.hpp>
#include <algo/blast/api/objmgr_query_data.hpp>
#include <algo/blast/format/blast_format.hpp>
#include <util/profile/rtprofile.hpp>
#include "blast_app_util.hpp"
#include "blastn_node.hpp"
+ Include dependency graph for blastn_app.cpp:

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class  CBlastnApp


 USING_SCOPE (blast)
 USING_SCOPE (objects)
static void s_GetMT1Cutoffs (const int word_size, Int8 &max_db_size, Int8 &min_q_size)
int NcbiSys_main (int argc, ncbi::TXChar *argv[])



Detailed Description

BLASTN command line application.

Definition in file blastn_app.cpp.

Function Documentation

◆ NcbiSys_main()

int NcbiSys_main ( int  argc,
ncbi::TXChar argv[] 

Definition at line 407 of file blastn_app.cpp.

References CNcbiApplicationAPI::AppMain().

◆ s_GetMT1Cutoffs()

static void s_GetMT1Cutoffs ( const int  word_size,
Int8 max_db_size,
Int8 min_q_size 

Definition at line 96 of file blastn_app.cpp.

Referenced by CBlastnApp::Run().

◆ USING_SCOPE() [1/2]

USING_SCOPE ( blast  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation



Definition at line 47 of file blastn_app.cpp.

Modified on Sun May 19 04:44:44 2024 by rev. 669887