NCBI C++ ToolKit
Public Member Functions | Public Attributes | List of all members
BLAST_Matrix Class Reference

Search Toolkit Book for BLAST_Matrix

#include <algo/structure/struct_util/su_pssm.hpp>

Public Member Functions

 BLAST_Matrix (int nRows, int nColumns)
 
 ~BLAST_Matrix (void)
 

Public Attributes

bool is_prot
 
char * name
 
int rows
 
int columns
 
int ** matrix
 
double karlinK
 

Detailed Description

Definition at line 46 of file su_pssm.hpp.

Constructor & Destructor Documentation

◆ BLAST_Matrix()

BLAST_Matrix::BLAST_Matrix ( int  nRows,
int  nColumns 
)

Definition at line 540 of file su_pssm.cpp.

References columns, i, matrix, nRows, and rows.

◆ ~BLAST_Matrix()

BLAST_Matrix::~BLAST_Matrix ( void  )

Definition at line 551 of file su_pssm.cpp.

References i, matrix, and rows.

Member Data Documentation

◆ columns

int BLAST_Matrix::columns

Definition at line 54 of file su_pssm.hpp.

Referenced by BLAST_Matrix(), and ConvertPSSMToBLASTMatrix().

◆ is_prot

bool BLAST_Matrix::is_prot

Definition at line 50 of file su_pssm.hpp.

Referenced by ConvertPSSMToBLASTMatrix().

◆ karlinK

double BLAST_Matrix::karlinK

Definition at line 57 of file su_pssm.hpp.

Referenced by ConvertPSSMToBLASTMatrix().

◆ matrix

int** BLAST_Matrix::matrix

◆ name

char* BLAST_Matrix::name

Definition at line 51 of file su_pssm.hpp.

Referenced by ConvertPSSMToBLASTMatrix().

◆ rows

int BLAST_Matrix::rows

Definition at line 53 of file su_pssm.hpp.

Referenced by BLAST_Matrix(), ConvertPSSMToBLASTMatrix(), and ~BLAST_Matrix().


The documentation for this class was generated from the following files:
Modified on Mon Jun 24 05:23:17 2024 by modify_doxy.py rev. 669887