NCBI C++ ToolKit
CAdjustForConsensusSpliceSite Member List

This is the complete list of members for CAdjustForConsensusSpliceSite, including all inherited members.

AdjustCDS(objects::CSeq_feat &cds)CAdjustForConsensusSpliceSite
AdjustCDSEnds(objects::CSeq_feat &cds)CAdjustForConsensusSpliceSite
AdjustmRNAandExonEnds(const objects::CSeq_feat &new_cds, const objects::CSeq_feat &orig_cds)CAdjustForConsensusSpliceSite
AdjustmRNAandExonFeatures(const objects::CSeq_feat &new_cds, const objects::CSeq_feat &orig_cds)CAdjustForConsensusSpliceSite
AdjustmRNAToMatchCDS(const objects::CSeq_feat &edit_cds, objects::CSeq_feat &mrna)CAdjustForConsensusSpliceSite
AdjustmRNAToMatchCDSEnds(const objects::CSeq_feat &edit_cds, objects::CSeq_feat &mrna)CAdjustForConsensusSpliceSite
CAdjustForConsensusSpliceSite(objects::CScope &scope)CAdjustForConsensusSpliceSiteinline
GetCommand(const objects::CSeq_feat &cds)CAdjustForConsensusSpliceSite
GetCommandToAdjustCDSEnds(const objects::CSeq_feat &cds)CAdjustForConsensusSpliceSite
m_New_RangesCAdjustForConsensusSpliceSiteprivate
m_Orig_RangesCAdjustForConsensusSpliceSiteprivate
m_ProtChangedCAdjustForConsensusSpliceSiteprivate
m_ScopeCAdjustForConsensusSpliceSiteprivate
m_StrandCAdjustForConsensusSpliceSiteprivate
s_IsAdjustedSpliceSitePairOK(const string &seqdata, TSeqPos intron_start, TSeqPos intron_stop)CAdjustForConsensusSpliceSitestatic
s_IsBioseqGood_AdjustEnds(const objects::CBioseq_Handle &bsh)CAdjustForConsensusSpliceSitestatic
s_IsBioseqGood_Relaxed(const objects::CBioseq_Handle &bsh)CAdjustForConsensusSpliceSitestatic
s_IsBioseqGood_Strict(const objects::CBioseq_Handle &bsh)CAdjustForConsensusSpliceSitestatic
SetScope(objects::CScope &scope)CAdjustForConsensusSpliceSiteinline
TLocs typedefCAdjustForConsensusSpliceSiteprivate
x_AdjustCDS3End(objects::CSeq_feat &cds, const string &orig_prot_seq)CAdjustForConsensusSpliceSiteprivate
x_AdjustCDS5End(objects::CSeq_feat &cds, const string &orig_prot_seq)CAdjustForConsensusSpliceSiteprivate
x_AlsoAdjustmRNA(objects::CSeq_feat &mrna, const objects::CSeq_loc &loc)CAdjustForConsensusSpliceSiteprivate
x_CreateNewLocation(const objects::CSeq_feat &cds)CAdjustForConsensusSpliceSiteprivate
x_ExtendStartOfExon(TSeqRange &range, TSeqPos offset, const objects::CSeq_loc &loc, objects::CBioseq_Handle bsh)CAdjustForConsensusSpliceSiteprivate
x_ExtendStopOfExon(TSeqRange &range, TSeqPos offset, const objects::CSeq_loc &loc, objects::CBioseq_Handle bsh)CAdjustForConsensusSpliceSiteprivate
x_HasProteinChanged(const objects::CSeq_feat &cds, const string &orig_prot_seq)CAdjustForConsensusSpliceSiteprivate
x_HasProteinChangedAt3End(objects::CSeq_feat &cds, const string &orig_prot_seq)CAdjustForConsensusSpliceSiteprivate
x_HasProteinChangedAt5End(objects::CSeq_feat &cds, const string &orig_prot_seq)CAdjustForConsensusSpliceSiteprivate
x_InitRanges(const objects::CSeq_feat &cds)CAdjustForConsensusSpliceSiteprivate
x_IntronLength(const TSeqRange &rng_prev, const TSeqRange &rng)CAdjustForConsensusSpliceSiteprivate
x_ShiftExonPairBackward(TSeqRange &range_prev, TSeqRange &range, TSeqPos offset)CAdjustForConsensusSpliceSiteprivate
x_ShiftExonPairForward(TSeqRange &range_prev, TSeqRange &range, TSeqPos offset)CAdjustForConsensusSpliceSiteprivate
x_TrimStartOfExon(TSeqRange &range, TSeqPos offset)CAdjustForConsensusSpliceSiteprivate
x_TrimStopOfExon(TSeqRange &range, TSeqPos offset)CAdjustForConsensusSpliceSiteprivate
x_UpdateExonFeatures(CCmdComposite *cmd, const objects::CSeq_feat &orig_cds, const objects::CSeq_feat &new_cds)CAdjustForConsensusSpliceSiteprivate
x_UpdateInterval(objects::CSeq_interval &interval)CAdjustForConsensusSpliceSiteprivate
x_UpdateIntervals(objects::CSeq_loc::TIntervals &locs)CAdjustForConsensusSpliceSiteprivate
x_UpdateLocation(const objects::CSeq_feat &cds)CAdjustForConsensusSpliceSiteprivate
x_UpdateMixLocations(const objects::CSeq_loc &orig_loc, objects::CSeq_loc::TLocations &locs)CAdjustForConsensusSpliceSiteprivate
Modified on Thu Apr 11 15:11:31 2024 by modify_doxy.py rev. 669887