Search Toolkit Book for CAdjust_features_for_gaps_action_Base
CAdjust_features_for_gaps_action_Base –. More...
#include <objects/macro/Adjus_featu_for_gaps_actio_.hpp>
Inheritance diagram for CAdjust_features_for_gaps_action_Base:
Collaboration diagram for CAdjust_features_for_gaps_action_Base:
Public Types | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_type , e_adjust_for_unknown_length_gaps , e_adjust_for_known_length_gaps , e_make_truncated_ends_partial , e_trim_ends_in_gaps , e_split_for_internal_gaps , e_even_when_gaps_are_in_introns } |
| typedef EMacro_feature_type | TType |
| typedef bool | TAdjust_for_unknown_length_gaps |
| typedef bool | TAdjust_for_known_length_gaps |
| typedef ETruncated_ends_partial_type | TMake_truncated_ends_partial |
| typedef bool | TTrim_ends_in_gaps |
| typedef bool | TSplit_for_internal_gaps |
| typedef bool | TEven_when_gaps_are_in_introns |
| typedef Tparent::CMemberIndex< E_memberIndex, 8 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
Public Member Functions | |
| CAdjust_features_for_gaps_action_Base (void) | |
| virtual | ~CAdjust_features_for_gaps_action_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetType (void) const |
| Check if a value has been assigned to Type data member. More... | |
| bool | CanGetType (void) const |
| Check if it is safe to call GetType method. More... | |
| void | ResetType (void) |
| Reset Type data member. More... | |
| TType | GetType (void) const |
| Get the Type member data. More... | |
| void | SetType (TType value) |
| Assign a value to Type data member. More... | |
| TType & | SetType (void) |
| Assign a value to Type data member. More... | |
| bool | IsSetAdjust_for_unknown_length_gaps (void) const |
| Check if a value has been assigned to Adjust_for_unknown_length_gaps data member. More... | |
| bool | CanGetAdjust_for_unknown_length_gaps (void) const |
| Check if it is safe to call GetAdjust_for_unknown_length_gaps method. More... | |
| void | ResetAdjust_for_unknown_length_gaps (void) |
| Reset Adjust_for_unknown_length_gaps data member. More... | |
| TAdjust_for_unknown_length_gaps | GetAdjust_for_unknown_length_gaps (void) const |
| Get the Adjust_for_unknown_length_gaps member data. More... | |
| void | SetAdjust_for_unknown_length_gaps (TAdjust_for_unknown_length_gaps value) |
| Assign a value to Adjust_for_unknown_length_gaps data member. More... | |
| TAdjust_for_unknown_length_gaps & | SetAdjust_for_unknown_length_gaps (void) |
| Assign a value to Adjust_for_unknown_length_gaps data member. More... | |
| bool | IsSetAdjust_for_known_length_gaps (void) const |
| Check if a value has been assigned to Adjust_for_known_length_gaps data member. More... | |
| bool | CanGetAdjust_for_known_length_gaps (void) const |
| Check if it is safe to call GetAdjust_for_known_length_gaps method. More... | |
| void | ResetAdjust_for_known_length_gaps (void) |
| Reset Adjust_for_known_length_gaps data member. More... | |
| TAdjust_for_known_length_gaps | GetAdjust_for_known_length_gaps (void) const |
| Get the Adjust_for_known_length_gaps member data. More... | |
| void | SetAdjust_for_known_length_gaps (TAdjust_for_known_length_gaps value) |
| Assign a value to Adjust_for_known_length_gaps data member. More... | |
| TAdjust_for_known_length_gaps & | SetAdjust_for_known_length_gaps (void) |
| Assign a value to Adjust_for_known_length_gaps data member. More... | |
| bool | IsSetMake_truncated_ends_partial (void) const |
| Check if a value has been assigned to Make_truncated_ends_partial data member. More... | |
| bool | CanGetMake_truncated_ends_partial (void) const |
| Check if it is safe to call GetMake_truncated_ends_partial method. More... | |
| void | ResetMake_truncated_ends_partial (void) |
| Reset Make_truncated_ends_partial data member. More... | |
| TMake_truncated_ends_partial | GetMake_truncated_ends_partial (void) const |
| Get the Make_truncated_ends_partial member data. More... | |
| void | SetMake_truncated_ends_partial (TMake_truncated_ends_partial value) |
| Assign a value to Make_truncated_ends_partial data member. More... | |
| TMake_truncated_ends_partial & | SetMake_truncated_ends_partial (void) |
| Assign a value to Make_truncated_ends_partial data member. More... | |
| bool | IsSetTrim_ends_in_gaps (void) const |
| Check if a value has been assigned to Trim_ends_in_gaps data member. More... | |
| bool | CanGetTrim_ends_in_gaps (void) const |
| Check if it is safe to call GetTrim_ends_in_gaps method. More... | |
| void | ResetTrim_ends_in_gaps (void) |
| Reset Trim_ends_in_gaps data member. More... | |
| TTrim_ends_in_gaps | GetTrim_ends_in_gaps (void) const |
| Get the Trim_ends_in_gaps member data. More... | |
| void | SetTrim_ends_in_gaps (TTrim_ends_in_gaps value) |
| Assign a value to Trim_ends_in_gaps data member. More... | |
| TTrim_ends_in_gaps & | SetTrim_ends_in_gaps (void) |
| Assign a value to Trim_ends_in_gaps data member. More... | |
| bool | IsSetSplit_for_internal_gaps (void) const |
| Check if a value has been assigned to Split_for_internal_gaps data member. More... | |
| bool | CanGetSplit_for_internal_gaps (void) const |
| Check if it is safe to call GetSplit_for_internal_gaps method. More... | |
| void | ResetSplit_for_internal_gaps (void) |
| Reset Split_for_internal_gaps data member. More... | |
| TSplit_for_internal_gaps | GetSplit_for_internal_gaps (void) const |
| Get the Split_for_internal_gaps member data. More... | |
| void | SetSplit_for_internal_gaps (TSplit_for_internal_gaps value) |
| Assign a value to Split_for_internal_gaps data member. More... | |
| TSplit_for_internal_gaps & | SetSplit_for_internal_gaps (void) |
| Assign a value to Split_for_internal_gaps data member. More... | |
| bool | IsSetEven_when_gaps_are_in_introns (void) const |
| Check if a value has been assigned to Even_when_gaps_are_in_introns data member. More... | |
| bool | CanGetEven_when_gaps_are_in_introns (void) const |
| Check if it is safe to call GetEven_when_gaps_are_in_introns method. More... | |
| void | ResetEven_when_gaps_are_in_introns (void) |
| Reset Even_when_gaps_are_in_introns data member. More... | |
| TEven_when_gaps_are_in_introns | GetEven_when_gaps_are_in_introns (void) const |
| Get the Even_when_gaps_are_in_introns member data. More... | |
| void | SetEven_when_gaps_are_in_introns (TEven_when_gaps_are_in_introns value) |
| Assign a value to Even_when_gaps_are_in_introns data member. More... | |
| TEven_when_gaps_are_in_introns & | SetEven_when_gaps_are_in_introns (void) |
| Assign a value to Even_when_gaps_are_in_introns data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CSerialObject | Tparent |
Additional Inherited Members | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CAdjust_features_for_gaps_action_Base –.
Definition at line 73 of file Adjus_featu_for_gaps_actio_.hpp.
The documentation for this class was generated from the following files:
- include/objects/macro/Adjus_featu_for_gaps_actio_.hpp
- src/objects/macro/Adjus_featu_for_gaps_actio_.cpp
