NCBI C++ ToolKit
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Search Toolkit Book for CAlign_stats
#include <objects/mmdb3/Align_stats.hpp>
Public Member Functions | |
CAlign_stats (void) | |
~CAlign_stats (void) | |
Public Member Functions inherited from CAlign_stats_Base | |
CAlign_stats_Base (void) | |
virtual | ~CAlign_stats_Base (void) |
DECLARE_INTERNAL_TYPE_INFO () | |
bool | IsSetDescr (void) const |
Check if a value has been assigned to Descr data member. More... | |
bool | CanGetDescr (void) const |
Check if it is safe to call GetDescr method. More... | |
void | ResetDescr (void) |
Reset Descr data member. More... | |
const TDescr & | GetDescr (void) const |
Get the Descr member data. More... | |
void | SetDescr (const TDescr &value) |
Assign a value to Descr data member. More... | |
void | SetDescr (TDescr &&value) |
TDescr & | SetDescr (void) |
Assign a value to Descr data member. More... | |
bool | IsSetScale_factor (void) const |
Check if a value has been assigned to Scale_factor data member. More... | |
bool | CanGetScale_factor (void) const |
Check if it is safe to call GetScale_factor method. More... | |
void | ResetScale_factor (void) |
Reset Scale_factor data member. More... | |
TScale_factor | GetScale_factor (void) const |
Get the Scale_factor member data. More... | |
void | SetScale_factor (TScale_factor value) |
Assign a value to Scale_factor data member. More... | |
TScale_factor & | SetScale_factor (void) |
Assign a value to Scale_factor data member. More... | |
bool | IsSetVast_score (void) const |
Check if a value has been assigned to Vast_score data member. More... | |
bool | CanGetVast_score (void) const |
Check if it is safe to call GetVast_score method. More... | |
void | ResetVast_score (void) |
Reset Vast_score data member. More... | |
TVast_score | GetVast_score (void) const |
Get the Vast_score member data. More... | |
void | SetVast_score (TVast_score value) |
Assign a value to Vast_score data member. More... | |
TVast_score & | SetVast_score (void) |
Assign a value to Vast_score data member. More... | |
bool | IsSetVast_mlogp (void) const |
Check if a value has been assigned to Vast_mlogp data member. More... | |
bool | CanGetVast_mlogp (void) const |
Check if it is safe to call GetVast_mlogp method. More... | |
void | ResetVast_mlogp (void) |
Reset Vast_mlogp data member. More... | |
TVast_mlogp | GetVast_mlogp (void) const |
Get the Vast_mlogp member data. More... | |
void | SetVast_mlogp (TVast_mlogp value) |
Assign a value to Vast_mlogp data member. More... | |
TVast_mlogp & | SetVast_mlogp (void) |
Assign a value to Vast_mlogp data member. More... | |
bool | IsSetAlign_res (void) const |
Check if a value has been assigned to Align_res data member. More... | |
bool | CanGetAlign_res (void) const |
Check if it is safe to call GetAlign_res method. More... | |
void | ResetAlign_res (void) |
Reset Align_res data member. More... | |
TAlign_res | GetAlign_res (void) const |
Get the Align_res member data. More... | |
void | SetAlign_res (TAlign_res value) |
Assign a value to Align_res data member. More... | |
TAlign_res & | SetAlign_res (void) |
Assign a value to Align_res data member. More... | |
bool | IsSetRmsd (void) const |
Check if a value has been assigned to Rmsd data member. More... | |
bool | CanGetRmsd (void) const |
Check if it is safe to call GetRmsd method. More... | |
void | ResetRmsd (void) |
Reset Rmsd data member. More... | |
TRmsd | GetRmsd (void) const |
Get the Rmsd member data. More... | |
void | SetRmsd (TRmsd value) |
Assign a value to Rmsd data member. More... | |
TRmsd & | SetRmsd (void) |
Assign a value to Rmsd data member. More... | |
bool | IsSetBlast_score (void) const |
Check if a value has been assigned to Blast_score data member. More... | |
bool | CanGetBlast_score (void) const |
Check if it is safe to call GetBlast_score method. More... | |
void | ResetBlast_score (void) |
Reset Blast_score data member. More... | |
TBlast_score | GetBlast_score (void) const |
Get the Blast_score member data. More... | |
void | SetBlast_score (TBlast_score value) |
Assign a value to Blast_score data member. More... | |
TBlast_score & | SetBlast_score (void) |
Assign a value to Blast_score data member. More... | |
bool | IsSetBlast_mlogp (void) const |
Check if a value has been assigned to Blast_mlogp data member. More... | |
bool | CanGetBlast_mlogp (void) const |
Check if it is safe to call GetBlast_mlogp method. More... | |
void | ResetBlast_mlogp (void) |
Reset Blast_mlogp data member. More... | |
TBlast_mlogp | GetBlast_mlogp (void) const |
Get the Blast_mlogp member data. More... | |
void | SetBlast_mlogp (TBlast_mlogp value) |
Assign a value to Blast_mlogp data member. More... | |
TBlast_mlogp & | SetBlast_mlogp (void) |
Assign a value to Blast_mlogp data member. More... | |
bool | IsSetOther_score (void) const |
Check if a value has been assigned to Other_score data member. More... | |
bool | CanGetOther_score (void) const |
Check if it is safe to call GetOther_score method. More... | |
void | ResetOther_score (void) |
Reset Other_score data member. More... | |
TOther_score | GetOther_score (void) const |
Get the Other_score member data. More... | |
void | SetOther_score (TOther_score value) |
Assign a value to Other_score data member. More... | |
TOther_score & | SetOther_score (void) |
Assign a value to Other_score data member. More... | |
virtual void | Reset (void) |
Reset the whole object. More... | |
Public Member Functions inherited from CSerialObject | |
CSerialObject (void) | |
virtual | ~CSerialObject (void) |
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
Set object to copy of another one. More... | |
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
Check if both objects contain the same values. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
void | ThrowUnassigned (TMemberIndex index) const |
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
bool | HasNamespaceName (void) const |
Check if object data type has namespace name. More... | |
const string & | GetNamespaceName (void) const |
Get namespace name. More... | |
bool | HasNamespacePrefix (void) const |
Check if data type has namespace prefix. More... | |
const string & | GetNamespacePrefix (void) const |
Get namespace prefix. More... | |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Private Types | |
typedef CAlign_stats_Base | Tparent |
Private Member Functions | |
CAlign_stats (const CAlign_stats &value) | |
CAlign_stats & | operator= (const CAlign_stats &value) |
Additional Inherited Members | |
Public Types inherited from CAlign_stats_Base | |
enum class | E_memberIndex { e__allMandatory = 0 , e_descr , e_scale_factor , e_vast_score , e_vast_mlogp , e_align_res , e_rmsd , e_blast_score , e_blast_mlogp , e_other_score } |
typedef string | TDescr |
typedef int | TScale_factor |
typedef int | TVast_score |
typedef int | TVast_mlogp |
typedef int | TAlign_res |
typedef int | TRmsd |
typedef int | TBlast_score |
typedef int | TBlast_mlogp |
typedef int | TOther_score |
typedef Tparent::CMemberIndex< E_memberIndex, 10 > | TmemberIndex |
Public Types inherited from CObject | |
enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
Control filling of newly allocated memory. More... | |
typedef CObjectCounterLocker | TLockerType |
Default locker type for CRef. More... | |
typedef atomic< Uint8 > | TCounter |
Counter type is CAtomiCounter. More... | |
typedef Uint8 | TCount |
Alias for value type of counter. More... | |
Static Public Member Functions inherited from CSerialObject | |
static void | SetVerifyDataThread (ESerialVerifyData verify) |
static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
static string | UnassignedString (void) |
static CStringUTF8 | UnassignedStringUTF8 (void) |
static char | UnassignedByte (void) |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Static Public Attributes inherited from CSerialObject | |
static const char * | ms_UnassignedStr = "<*unassigned*>" |
static const char | ms_UnassignedByte = char(0xcd) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
CAlign_stats –.
Definition at line 65 of file Align_stats.hpp.