Search Toolkit Book for CAlign_stats
#include <objects/mmdb3/Align_stats.hpp>
Inheritance diagram for CAlign_stats:
Collaboration diagram for CAlign_stats:
Public Member Functions | |
| CAlign_stats (void) | |
| ~CAlign_stats (void) | |
| Public Member Functions inherited from CAlign_stats_Base | |
| CAlign_stats_Base (void) | |
| virtual | ~CAlign_stats_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetDescr (void) const |
| Check if a value has been assigned to Descr data member. More... | |
| bool | CanGetDescr (void) const |
| Check if it is safe to call GetDescr method. More... | |
| void | ResetDescr (void) |
| Reset Descr data member. More... | |
| const TDescr & | GetDescr (void) const |
| Get the Descr member data. More... | |
| void | SetDescr (const TDescr &value) |
| Assign a value to Descr data member. More... | |
| void | SetDescr (TDescr &&value) |
| TDescr & | SetDescr (void) |
| Assign a value to Descr data member. More... | |
| bool | IsSetScale_factor (void) const |
| Check if a value has been assigned to Scale_factor data member. More... | |
| bool | CanGetScale_factor (void) const |
| Check if it is safe to call GetScale_factor method. More... | |
| void | ResetScale_factor (void) |
| Reset Scale_factor data member. More... | |
| TScale_factor | GetScale_factor (void) const |
| Get the Scale_factor member data. More... | |
| void | SetScale_factor (TScale_factor value) |
| Assign a value to Scale_factor data member. More... | |
| TScale_factor & | SetScale_factor (void) |
| Assign a value to Scale_factor data member. More... | |
| bool | IsSetVast_score (void) const |
| Check if a value has been assigned to Vast_score data member. More... | |
| bool | CanGetVast_score (void) const |
| Check if it is safe to call GetVast_score method. More... | |
| void | ResetVast_score (void) |
| Reset Vast_score data member. More... | |
| TVast_score | GetVast_score (void) const |
| Get the Vast_score member data. More... | |
| void | SetVast_score (TVast_score value) |
| Assign a value to Vast_score data member. More... | |
| TVast_score & | SetVast_score (void) |
| Assign a value to Vast_score data member. More... | |
| bool | IsSetVast_mlogp (void) const |
| Check if a value has been assigned to Vast_mlogp data member. More... | |
| bool | CanGetVast_mlogp (void) const |
| Check if it is safe to call GetVast_mlogp method. More... | |
| void | ResetVast_mlogp (void) |
| Reset Vast_mlogp data member. More... | |
| TVast_mlogp | GetVast_mlogp (void) const |
| Get the Vast_mlogp member data. More... | |
| void | SetVast_mlogp (TVast_mlogp value) |
| Assign a value to Vast_mlogp data member. More... | |
| TVast_mlogp & | SetVast_mlogp (void) |
| Assign a value to Vast_mlogp data member. More... | |
| bool | IsSetAlign_res (void) const |
| Check if a value has been assigned to Align_res data member. More... | |
| bool | CanGetAlign_res (void) const |
| Check if it is safe to call GetAlign_res method. More... | |
| void | ResetAlign_res (void) |
| Reset Align_res data member. More... | |
| TAlign_res | GetAlign_res (void) const |
| Get the Align_res member data. More... | |
| void | SetAlign_res (TAlign_res value) |
| Assign a value to Align_res data member. More... | |
| TAlign_res & | SetAlign_res (void) |
| Assign a value to Align_res data member. More... | |
| bool | IsSetRmsd (void) const |
| Check if a value has been assigned to Rmsd data member. More... | |
| bool | CanGetRmsd (void) const |
| Check if it is safe to call GetRmsd method. More... | |
| void | ResetRmsd (void) |
| Reset Rmsd data member. More... | |
| TRmsd | GetRmsd (void) const |
| Get the Rmsd member data. More... | |
| void | SetRmsd (TRmsd value) |
| Assign a value to Rmsd data member. More... | |
| TRmsd & | SetRmsd (void) |
| Assign a value to Rmsd data member. More... | |
| bool | IsSetBlast_score (void) const |
| Check if a value has been assigned to Blast_score data member. More... | |
| bool | CanGetBlast_score (void) const |
| Check if it is safe to call GetBlast_score method. More... | |
| void | ResetBlast_score (void) |
| Reset Blast_score data member. More... | |
| TBlast_score | GetBlast_score (void) const |
| Get the Blast_score member data. More... | |
| void | SetBlast_score (TBlast_score value) |
| Assign a value to Blast_score data member. More... | |
| TBlast_score & | SetBlast_score (void) |
| Assign a value to Blast_score data member. More... | |
| bool | IsSetBlast_mlogp (void) const |
| Check if a value has been assigned to Blast_mlogp data member. More... | |
| bool | CanGetBlast_mlogp (void) const |
| Check if it is safe to call GetBlast_mlogp method. More... | |
| void | ResetBlast_mlogp (void) |
| Reset Blast_mlogp data member. More... | |
| TBlast_mlogp | GetBlast_mlogp (void) const |
| Get the Blast_mlogp member data. More... | |
| void | SetBlast_mlogp (TBlast_mlogp value) |
| Assign a value to Blast_mlogp data member. More... | |
| TBlast_mlogp & | SetBlast_mlogp (void) |
| Assign a value to Blast_mlogp data member. More... | |
| bool | IsSetOther_score (void) const |
| Check if a value has been assigned to Other_score data member. More... | |
| bool | CanGetOther_score (void) const |
| Check if it is safe to call GetOther_score method. More... | |
| void | ResetOther_score (void) |
| Reset Other_score data member. More... | |
| TOther_score | GetOther_score (void) const |
| Get the Other_score member data. More... | |
| void | SetOther_score (TOther_score value) |
| Assign a value to Other_score data member. More... | |
| TOther_score & | SetOther_score (void) |
| Assign a value to Other_score data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CAlign_stats_Base | Tparent |
Private Member Functions | |
| CAlign_stats (const CAlign_stats &value) | |
| CAlign_stats & | operator= (const CAlign_stats &value) |
Additional Inherited Members | |
| Public Types inherited from CAlign_stats_Base | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_descr , e_scale_factor , e_vast_score , e_vast_mlogp , e_align_res , e_rmsd , e_blast_score , e_blast_mlogp , e_other_score } |
| typedef string | TDescr |
| typedef int | TScale_factor |
| typedef int | TVast_score |
| typedef int | TVast_mlogp |
| typedef int | TAlign_res |
| typedef int | TRmsd |
| typedef int | TBlast_score |
| typedef int | TBlast_mlogp |
| typedef int | TOther_score |
| typedef Tparent::CMemberIndex< E_memberIndex, 10 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
CAlign_stats –.
Definition at line 65 of file Align_stats.hpp.
The documentation for this class was generated from the following files:
- include/objects/mmdb3/Align_stats.hpp
- src/objects/mmdb3/Align_stats.cpp
