Search Toolkit Book for CAlignmentConfig

File Description: More...

#include <gui/widgets/seq_graphic/alignment_conf.hpp>

Inheritance diagram for CAlignmentConfig:

Collaboration diagram for CAlignmentConfig:

Public Types
enum	ELabelPosition { ePos_Above , ePos_Side , ePos_NoLabel }

enum	ECompactMode { eNormal , eCompact , eExtremeCompact }

enum	EHideSraAlignments { eHide_None = 0x0 , eHide_Duplicates = 0x1 , eHide_BadReads = 0x2 , eHide_Both = 0x3 }

enum	EUnalignedTailsMode { eTails_Hide , eTails_ShowGlyph , eTails_ShowSequence }

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CAlignmentConfig ()

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Attributes
CGlTextureFont	m_LabelFont

CGlTextureFont	m_SeqFont

ELabelPosition	m_LabelPos

EUnalignedTailsMode	m_UnalignedTailsMode

int	m_BarHeight

bool	m_ShowLabel

bool	m_ShowIdenticalBases

bool	m_ShowUnalignedTailsForTrans2GenomicAln

ECompactMode	m_CompactMode
	Alignment layout compact mode. More...

bool	m_Dirty
	Dirty flag indicates any unsaved changes. More...

Colors.
CRgbaColor	m_BG

CRgbaColor	m_FG

CRgbaColor	m_Label

CRgbaColor	m_Sequence

CRgbaColor	m_SeqMismatch

CRgbaColor	m_TailColor

CRgbaColor	m_Insertion

CRgbaColor	m_Gap

CRgbaColor	m_Intron

CRgbaColor	m_NonConsensus

CRgbaColor	m_SmearColorMin

CRgbaColor	m_SmearColorMax

CRgbaColor	m_UnalignedFG

CRgbaColor	m_UnalignedSequence

Additional Inherited Members
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...