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CAlnVecMultiDataSource Class Reference

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CAlnVecMultiDataSource - implementation of IAlnMultiDataSource for CAlnVec-based alignments. More...

#include <gui/widgets/aln_multiple/alnvec_multi_ds.hpp>

+ Inheritance diagram for CAlnVecMultiDataSource:
+ Collaboration diagram for CAlnVecMultiDataSource:

Public Member Functions

 CAlnVecMultiDataSource (objects::CScope &scope)
 
 ~CAlnVecMultiDataSource ()
 
virtual void Init (const objects::CSeq_annot &annot, bool sync=false, bool select_anchor=false)
 
virtual void Init (const objects::CBioseq_Handle &handle, bool sync=false, bool select_anchor=false)
 
virtual void Init (const vector< CConstRef< objects::CSeq_align > > &aligns, bool sync=false, bool select_anchor=false)
 
void OnAppJobNotification (CEvent *evt)
 
IAlnMultiDataSource implementation
virtual bool IsEmpty () const
 
virtual void SetGapChar (TResidue gap_char)
 
virtual IAlnExplorer::EAlignType GetAlignType () const
 
virtual int GetConsensusRow () const
 returns index of the Consensus row or -1 if it doesn't exist More...
 
virtual bool CanCreateConsensus ()
 
void CreateConsensus (vector< string > &consens) const
 
virtual void CreateConsensus ()
 
virtual void SetCreateConsensus (bool b)
 
virtual TNumrow GetNumRows (void) const
 number of rows in alignment More...
 
virtual TSeqPos GetAlnStart (void) const
 
virtual TSeqPos GetAlnStop (void) const
 
virtual TSeqPos GetSeqStart (TNumrow row) const
 
virtual TSeqPos GetSeqStop (TNumrow row) const
 
virtual bool IsSetAnchor (void) const
 Anchoring methods. More...
 
virtual TNumrow GetAnchor (void) const
 
virtual bool CanChangeAnchor (void) const
 
virtual bool SetAnchor (TNumrow anchor)
 
virtual bool UnsetAnchor (void)
 
virtual bool CanGetId (TNumrow row) const
 
virtual const objects::CSeq_id & GetSeqId (TNumrow row) const
 
virtual const objects::CBioseq_Handle & GetBioseqHandle (TNumrow row) const
 
virtual TSeqPos GetBaseWidth (TNumrow row) const
 
virtual int GetGenCode (IAlnExplorer::TNumrow row) const
 
virtual bool IsPositiveStrand (TNumrow row) const
 
virtual bool IsNegativeStrand (TNumrow row) const
 
virtual TSignedSeqPos GetSeqPosFromAlnPos (TNumrow for_row, TSeqPos aln_pos, TSearchDirection dir=IAlnExplorer::eNone, bool try_reverse_dir=true) const
 
virtual TSignedSeqPos GetAlnPosFromSeqPos (TNumrow row, TSeqPos seq_pos, TSearchDirection dir=IAlnExplorer::eNone, bool try_reverse_dir=true) const
 
virtual stringGetAlnSeqString (TNumrow row, string &buffer, const IAlnExplorer::TSignedRange &aln_range) const
 
virtual const IAlignRowHandleGetRowHandle (TNumrow row) const
 
virtual IAlnSegmentIteratorCreateSegmentIterator (TNumrow row, const IAlnExplorer::TSignedRange &range, IAlnSegmentIterator::EFlags flags) const
 
virtual void GetAlnFromSeq (TNumrow row, const TRangeColl &seq_coll, TRangeColl &aln_coll) const
 
virtual void GetSeqFromAln (TNumrow row, const TRangeColl &aln_coll, TRangeColl &seq_coll) const
 
virtual bool IsDataReadSync () const
 
- Public Member Functions inherited from IAlnMultiDataSource
void CollectAlignStats (const TSignedSeqRange &range, TStatGraphs &graphs, bool translate_sequence=false) const
 
- Public Member Functions inherited from CDataChangeNotifier
 CDataChangeNotifier ()
 CUIDataSource. More...
 
virtual ~CDataChangeNotifier ()
 
virtual void SetListener (IListener *pListener)
 Subscribe a new listener. More...
 
virtual IListenerGetListener ()
 
virtual void NotifyListener (CUpdate &update)
 
- Public Member Functions inherited from CObjectEx
 CObjectEx (void)
 
virtual ~CObjectEx (void)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from CWeakObject
 CWeakObject (void)
 
virtual ~CWeakObject (void)
 
CPtrToObjectProxyGetPtrProxy (void) const
 Get pointer to proxy object containing pointer to this object. More...
 
- Public Member Functions inherited from IScoringAlignment
virtual ~IScoringAlignment ()
 
virtual bool IsMixedAlign () const
 New interfaces to handle alignemnt with mixed type (protein-to-genomic) To make them backward compatible, they have default implementation. More...
 
- Public Member Functions inherited from CEventHandler
 CEventHandler ()
 CEventHandler. More...
 
virtual ~CEventHandler ()
 
virtual void AddListener (CEventHandler *listener, int pool_name=ePool_Default)
 Add a listener. More...
 
virtual void RemoveListener (CEventHandler *listener)
 Remove a listener. More...
 
virtual void RemoveAllListeners (void)
 
virtual bool HasListener (CEventHandler *listener, int pool_name=ePool_Default) const
 returns "true" if the given listener belongs to the specified pool More...
 
virtual const TListenersGetListeners (int pool_name=ePool_Default) const
 returns a set of listeners fro the specified pool More...
 
virtual bool OnEvent (CEvent *evt)
 Processes en event. Returns "true" if event has been processed. More...
 
virtual bool Dispatch (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
 Dispatches an event to the listeners (but does not handle it). More...
 
virtual bool Send (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
 Sends an event synchronously. More...
 
virtual bool Send (CEvent *evt, int pool_name)
 
void Post (CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
 Handles an event asynchronously (process and/or dispatch). More...
 

Protected Types

typedef vector< CAlnVecRowHandle * > THandleVector
 

Protected Member Functions

virtual void x_ClearHandles ()
 
virtual void x_CreateHandles ()
 
virtual void x_Assign (objects::CAlnVec &aln_vec)
 
virtual bool x_IsJobRunning ()
 
virtual void x_DeleteJob ()
 
virtual void x_OnJobProgress (CAppJobNotification &notn)
 
 DECLARE_EVENT_MAP ()
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 
- Protected Member Functions inherited from CWeakObject
void CleanWeakRefs (void) const
 Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...
 
- Protected Member Functions inherited from CEventHandler
virtual const SEvtMapGetEventMap () const
 
void x_DeclareDead ()
 Removes itself unavailable for async event delivery. More...
 
void x_AddListenerToPool (CEventHandler *listener, int pool_name)
 

Protected Attributes

CRef< objects::CScope > m_Scope
 
CRef< objects::CAlnVec > m_AlnVec
 
int m_ConsRowIndex
 
bool m_CreateConsensus
 
CRef< CBuildAlnVecJobm_Job
 
int m_JobID
 
THandleVector m_Handles
 
- Protected Attributes inherited from CDataChangeNotifier
IListenerm_Listener
 
- Protected Attributes inherited from CEventHandler
TPools m_Pools
 

Private Member Functions

 CAlnVecMultiDataSource (const CAlnVecMultiDataSource &ds)
 
CAlnVecMultiDataSourceoperator= (const CAlnVecMultiDataSource &ds)
 

Private Attributes

bool m_isDataReadSync
 

Additional Inherited Members

- Public Types inherited from IAlnMultiDataSource
typedef IAlnExplorer::TNumrow TNumrow
 
typedef IAlnExplorer::TResidue TResidue
 
typedef IAlnExplorer::ESearchDirection TSearchDirection
 
typedef CRangeCollection< TSeqPosTRangeColl
 
using TStatGraphs = map< char, vector< unsigned > >
 
- Public Types inherited from CDataChangeNotifier
enum  EUpdateType { eChanged , eProgressReport , eError }
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Public Types inherited from CEventHandler
enum  EDispatch { eDispatch_SelfOnly , eDispatch_AllHandlers , eDispatch_FirstHandler , eDispatch_Default = eDispatch_AllHandlers }
 enum controlling dispatching strategies More...
 
enum  EPoolName {
  ePool_Default = 0 , ePool_Parent , ePool_Child , ePool_Sibling ,
  ePool_NextAvailable
}
 Identifiers for standard pools. More...
 
typedef vector< CEventHandler * > TListeners
 
typedef map< int, TListenersTPools
 
typedef list< AutoPtr< SPostRequest > > TPostRequests
 
typedef std::map< CEventHandler *, intTHandlerToCount
 
typedef void(* FOnPostCallback) ()
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Member Functions inherited from CEventHandler
static bool HandlePostRequest ()
 
static void ClearPostQueue ()
 erases all events from the queue More...
 
static void DestroyPostQueue ()
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Static Protected Attributes inherited from CEventHandler
static const SEvtMap sm_EvtMap
 

Detailed Description

CAlnVecMultiDataSource - implementation of IAlnMultiDataSource for CAlnVec-based alignments.

Definition at line 51 of file alnvec_multi_ds.hpp.

Member Typedef Documentation

◆ THandleVector

Definition at line 153 of file alnvec_multi_ds.hpp.

Constructor & Destructor Documentation

◆ CAlnVecMultiDataSource() [1/2]

CAlnVecMultiDataSource::CAlnVecMultiDataSource ( objects::CScope &  scope)

◆ ~CAlnVecMultiDataSource()

CAlnVecMultiDataSource::~CAlnVecMultiDataSource ( )

◆ CAlnVecMultiDataSource() [2/2]

CAlnVecMultiDataSource::CAlnVecMultiDataSource ( const CAlnVecMultiDataSource ds)
private

Member Function Documentation

◆ CanChangeAnchor()

bool CAlnVecMultiDataSource::CanChangeAnchor ( void  ) const
virtual

Implements IAlnMultiDataSource.

Definition at line 493 of file alnvec_multi_ds.cpp.

◆ CanCreateConsensus()

bool CAlnVecMultiDataSource::CanCreateConsensus ( )
virtual

Implements IAlnMultiDataSource.

Definition at line 664 of file alnvec_multi_ds.cpp.

◆ CanGetId()

bool CAlnVecMultiDataSource::CanGetId ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 513 of file alnvec_multi_ds.cpp.

References GetNumRows(), and row.

◆ CreateConsensus() [1/2]

void CAlnVecMultiDataSource::CreateConsensus ( void  )
virtual

◆ CreateConsensus() [2/2]

void CAlnVecMultiDataSource::CreateConsensus ( vector< string > &  consens) const

◆ CreateSegmentIterator()

IAlnSegmentIterator * CAlnVecMultiDataSource::CreateSegmentIterator ( TNumrow  row,
const IAlnExplorer::TSignedRange range,
IAlnSegmentIterator::EFlags  flags 
) const
virtual

◆ DECLARE_EVENT_MAP()

CAlnVecMultiDataSource::DECLARE_EVENT_MAP ( )
protected

◆ GetAlignType()

IAlnExplorer::EAlignType CAlnVecMultiDataSource::GetAlignType ( void  ) const
virtual

◆ GetAlnFromSeq()

void CAlnVecMultiDataSource::GetAlnFromSeq ( TNumrow  row,
const TRangeColl seq_coll,
TRangeColl aln_coll 
) const
virtual

◆ GetAlnPosFromSeqPos()

TSignedSeqPos CAlnVecMultiDataSource::GetAlnPosFromSeqPos ( TNumrow  row,
TSeqPos  seq_pos,
TSearchDirection  dir = IAlnExplorer::eNone,
bool  try_reverse_dir = true 
) const
virtual

Implements IAlnMultiDataSource.

Definition at line 552 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ GetAlnSeqString()

string & CAlnVecMultiDataSource::GetAlnSeqString ( TNumrow  row,
string buffer,
const IAlnExplorer::TSignedRange aln_range 
) const
virtual

Implements IAlnMultiDataSource.

Definition at line 570 of file alnvec_multi_ds.cpp.

References buffer, m_AlnVec, and row.

◆ GetAlnStart()

TSeqPos CAlnVecMultiDataSource::GetAlnStart ( void  ) const
virtual

Implements IAlnMultiDataSource.

Definition at line 457 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ GetAlnStop()

TSeqPos CAlnVecMultiDataSource::GetAlnStop ( void  ) const
virtual

Implements IAlnMultiDataSource.

Definition at line 463 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ GetAnchor()

CAlnVecMultiDataSource::TNumrow CAlnVecMultiDataSource::GetAnchor ( void  ) const
virtual

Implements IAlnMultiDataSource.

Definition at line 487 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ GetBaseWidth()

TSeqPos CAlnVecMultiDataSource::GetBaseWidth ( TNumrow  row) const
virtual

Implements IScoringAlignment.

Definition at line 530 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ GetBioseqHandle()

const CBioseq_Handle & CAlnVecMultiDataSource::GetBioseqHandle ( TNumrow  row) const
virtual

Definition at line 525 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

Referenced by GetAlignType().

◆ GetConsensusRow()

&CAlnVecMultiDataSource::OnAppJobNotification int CAlnVecMultiDataSource::GetConsensusRow ( ) const
virtual

returns index of the Consensus row or -1 if it doesn't exist

Implements IAlnMultiDataSource.

Definition at line 240 of file alnvec_multi_ds.cpp.

◆ GetGenCode()

int CAlnVecMultiDataSource::GetGenCode ( IAlnExplorer::TNumrow  row) const
virtual

Implements IScoringAlignment.

Definition at line 535 of file alnvec_multi_ds.cpp.

References IAlignRowHandle::GetGenCode(), GetRowHandle(), and row.

◆ GetNumRows()

CAlnVecMultiDataSource::TNumrow CAlnVecMultiDataSource::GetNumRows ( void  ) const
virtual

number of rows in alignment

Implements IAlnMultiDataSource.

Definition at line 451 of file alnvec_multi_ds.cpp.

References m_AlnVec.

Referenced by CanGetId().

◆ GetRowHandle()

const IAlignRowHandle * CAlnVecMultiDataSource::GetRowHandle ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 630 of file alnvec_multi_ds.cpp.

References m_Handles, and row.

Referenced by CreateSegmentIterator(), and GetGenCode().

◆ GetSeqFromAln()

void CAlnVecMultiDataSource::GetSeqFromAln ( TNumrow  row,
const TRangeColl aln_coll,
TRangeColl seq_coll 
) const
virtual

◆ GetSeqId()

const CSeq_id & CAlnVecMultiDataSource::GetSeqId ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 519 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ GetSeqPosFromAlnPos()

TSignedSeqPos CAlnVecMultiDataSource::GetSeqPosFromAlnPos ( TNumrow  for_row,
TSeqPos  aln_pos,
TSearchDirection  dir = IAlnExplorer::eNone,
bool  try_reverse_dir = true 
) const
virtual

Implements IAlnMultiDataSource.

Definition at line 561 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ GetSeqStart()

TSeqPos CAlnVecMultiDataSource::GetSeqStart ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 469 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ GetSeqStop()

TSeqPos CAlnVecMultiDataSource::GetSeqStop ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 475 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ Init() [1/3]

void CAlnVecMultiDataSource::Init ( const objects::CBioseq_Handle &  handle,
bool  sync = false,
bool  select_anchor = false 
)
virtual

◆ Init() [2/3]

void CAlnVecMultiDataSource::Init ( const objects::CSeq_annot &  annot,
bool  sync = false,
bool  select_anchor = false 
)
virtual

Definition at line 246 of file alnvec_multi_ds.cpp.

References ITERATE.

Referenced by Init().

◆ Init() [3/3]

virtual void CAlnVecMultiDataSource::Init ( const vector< CConstRef< objects::CSeq_align > > &  aligns,
bool  sync = false,
bool  select_anchor = false 
)
virtual

◆ IsDataReadSync()

virtual bool CAlnVecMultiDataSource::IsDataReadSync ( ) const
inlinevirtual

Reimplemented from IAlnMultiDataSource.

Definition at line 125 of file alnvec_multi_ds.hpp.

References m_isDataReadSync.

◆ IsEmpty()

bool CAlnVecMultiDataSource::IsEmpty ( void  ) const
virtual

Implements IAlnMultiDataSource.

Definition at line 312 of file alnvec_multi_ds.cpp.

References CRef< C, Locker >::GetPointer(), m_AlnVec, and NULL.

◆ IsNegativeStrand()

bool CAlnVecMultiDataSource::IsNegativeStrand ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 546 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ IsPositiveStrand()

bool CAlnVecMultiDataSource::IsPositiveStrand ( TNumrow  row) const
virtual

Implements IAlnMultiDataSource.

Definition at line 540 of file alnvec_multi_ds.cpp.

References m_AlnVec, and row.

◆ IsSetAnchor()

bool CAlnVecMultiDataSource::IsSetAnchor ( void  ) const
virtual

Anchoring methods.

Implements IAlnMultiDataSource.

Definition at line 481 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ OnAppJobNotification()

void CAlnVecMultiDataSource::OnAppJobNotification ( CEvent evt)

◆ operator=()

CAlnVecMultiDataSource& CAlnVecMultiDataSource::operator= ( const CAlnVecMultiDataSource ds)
private

◆ SetAnchor()

bool CAlnVecMultiDataSource::SetAnchor ( TNumrow  anchor)
virtual

Implements IAlnMultiDataSource.

Definition at line 499 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ SetCreateConsensus()

virtual void CAlnVecMultiDataSource::SetCreateConsensus ( bool  b)
inlinevirtual

Implements IAlnMultiDataSource.

Definition at line 79 of file alnvec_multi_ds.hpp.

References b, and m_CreateConsensus.

◆ SetGapChar()

void CAlnVecMultiDataSource::SetGapChar ( TResidue  gap_char)
virtual

Implements IAlnMultiDataSource.

Definition at line 423 of file alnvec_multi_ds.cpp.

References m_AlnVec.

Referenced by x_Assign().

◆ UnsetAnchor()

bool CAlnVecMultiDataSource::UnsetAnchor ( void  )
virtual

Implements IAlnMultiDataSource.

Definition at line 506 of file alnvec_multi_ds.cpp.

References m_AlnVec.

◆ x_Assign()

void CAlnVecMultiDataSource::x_Assign ( objects::CAlnVec &  aln_vec)
protectedvirtual

◆ x_ClearHandles()

void CAlnVecMultiDataSource::x_ClearHandles ( )
protectedvirtual

Definition at line 645 of file alnvec_multi_ds.cpp.

References m_Handles, and NON_CONST_ITERATE.

Referenced by CreateConsensus(), x_Assign(), and ~CAlnVecMultiDataSource().

◆ x_CreateHandles()

void CAlnVecMultiDataSource::x_CreateHandles ( )
protectedvirtual

Definition at line 654 of file alnvec_multi_ds.cpp.

References m_AlnVec, m_Handles, and r().

Referenced by CreateConsensus(), and x_Assign().

◆ x_DeleteJob()

void CAlnVecMultiDataSource::x_DeleteJob ( )
protectedvirtual

◆ x_IsJobRunning()

bool CAlnVecMultiDataSource::x_IsJobRunning ( )
protectedvirtual

Definition at line 385 of file alnvec_multi_ds.cpp.

References CRef< C, Locker >::GetPointer(), m_Job, and NULL.

Referenced by x_OnJobProgress(), and ~CAlnVecMultiDataSource().

◆ x_OnJobProgress()

void CAlnVecMultiDataSource::x_OnJobProgress ( CAppJobNotification notn)
protectedvirtual

Member Data Documentation

◆ m_AlnVec

CRef<objects::CAlnVec> CAlnVecMultiDataSource::m_AlnVec
protected

◆ m_ConsRowIndex

int CAlnVecMultiDataSource::m_ConsRowIndex
protected

Definition at line 157 of file alnvec_multi_ds.hpp.

Referenced by CreateConsensus(), and x_Assign().

◆ m_CreateConsensus

bool CAlnVecMultiDataSource::m_CreateConsensus
protected

Definition at line 158 of file alnvec_multi_ds.hpp.

Referenced by CreateConsensus(), SetCreateConsensus(), and x_Assign().

◆ m_Handles

THandleVector CAlnVecMultiDataSource::m_Handles
protected

Definition at line 163 of file alnvec_multi_ds.hpp.

Referenced by GetRowHandle(), x_Assign(), x_ClearHandles(), and x_CreateHandles().

◆ m_isDataReadSync

bool CAlnVecMultiDataSource::m_isDataReadSync
private

Definition at line 166 of file alnvec_multi_ds.hpp.

Referenced by IsDataReadSync().

◆ m_Job

CRef<CBuildAlnVecJob> CAlnVecMultiDataSource::m_Job
protected

Definition at line 160 of file alnvec_multi_ds.hpp.

Referenced by OnAppJobNotification(), x_DeleteJob(), and x_IsJobRunning().

◆ m_JobID

int CAlnVecMultiDataSource::m_JobID
protected

Definition at line 161 of file alnvec_multi_ds.hpp.

Referenced by OnAppJobNotification(), and x_DeleteJob().

◆ m_Scope

CRef<objects::CScope> CAlnVecMultiDataSource::m_Scope
protected

Definition at line 155 of file alnvec_multi_ds.hpp.


The documentation for this class was generated from the following files:
Modified on Tue Apr 16 20:12:03 2024 by modify_doxy.py rev. 669887