NCBI C++ ToolKit
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Search Toolkit Book for CAssembly_Base::C_Attlist

C_Attlist –. More...

#include <objects/docsum/Assembly_.hpp>

+ Inheritance diagram for CAssembly_Base::C_Attlist:
+ Collaboration diagram for CAssembly_Base::C_Attlist:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_dbSnpBuild , e_genomeBuild , e_groupLabel ,
  e_assemblySource , e_current , e_reference
}
 
typedef int TDbSnpBuild
 
typedef string TGenomeBuild
 
typedef string TGroupLabel
 
typedef string TAssemblySource
 
typedef bool TCurrent
 
typedef bool TReference
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 C_Attlist (void)
 
 ~C_Attlist (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetDbSnpBuild (void) const
 dbSNP build number defining the rsid set aligned to this assembly Check if a value has been assigned to DbSnpBuild data member. More...
 
bool CanGetDbSnpBuild (void) const
 Check if it is safe to call GetDbSnpBuild method. More...
 
void ResetDbSnpBuild (void)
 Reset DbSnpBuild data member. More...
 
TDbSnpBuild GetDbSnpBuild (void) const
 Get the DbSnpBuild member data. More...
 
void SetDbSnpBuild (TDbSnpBuild value)
 Assign a value to DbSnpBuild data member. More...
 
TDbSnpBuildSetDbSnpBuild (void)
 Assign a value to DbSnpBuild data member. More...
 
bool IsSetGenomeBuild (void) const
 assembly build number with possible 'subbuild' version numbers to reflect updates in gene annotation (human e.g. More...
 
bool CanGetGenomeBuild (void) const
 Check if it is safe to call GetGenomeBuild method. More...
 
void ResetGenomeBuild (void)
 Reset GenomeBuild data member. More...
 
const TGenomeBuildGetGenomeBuild (void) const
 Get the GenomeBuild member data. More...
 
void SetGenomeBuild (const TGenomeBuild &value)
 Assign a value to GenomeBuild data member. More...
 
void SetGenomeBuild (TGenomeBuild &&value)
 
TGenomeBuildSetGenomeBuild (void)
 Assign a value to GenomeBuild data member. More...
 
bool IsSetGroupLabel (void) const
 High-level classification of the assembly to distinguish reference projects from alternate solutions. More...
 
bool CanGetGroupLabel (void) const
 Check if it is safe to call GetGroupLabel method. More...
 
void ResetGroupLabel (void)
 Reset GroupLabel data member. More...
 
const TGroupLabelGetGroupLabel (void) const
 Get the GroupLabel member data. More...
 
void SetGroupLabel (const TGroupLabel &value)
 Assign a value to GroupLabel data member. More...
 
void SetGroupLabel (TGroupLabel &&value)
 
TGroupLabelSetGroupLabel (void)
 Assign a value to GroupLabel data member. More...
 
bool IsSetAssemblySource (void) const
 Name of the group(s) or organization(s) that generated the assembly Check if a value has been assigned to AssemblySource data member. More...
 
bool CanGetAssemblySource (void) const
 Check if it is safe to call GetAssemblySource method. More...
 
void ResetAssemblySource (void)
 Reset AssemblySource data member. More...
 
const TAssemblySourceGetAssemblySource (void) const
 Get the AssemblySource member data. More...
 
void SetAssemblySource (const TAssemblySource &value)
 Assign a value to AssemblySource data member. More...
 
void SetAssemblySource (TAssemblySource &&value)
 
TAssemblySourceSetAssemblySource (void)
 Assign a value to AssemblySource data member. More...
 
bool IsSetCurrent (void) const
 Marks the current genomic assembly Check if a value has been assigned to Current data member. More...
 
bool CanGetCurrent (void) const
 Check if it is safe to call GetCurrent method. More...
 
void ResetCurrent (void)
 Reset Current data member. More...
 
TCurrent GetCurrent (void) const
 Get the Current member data. More...
 
void SetCurrent (TCurrent value)
 Assign a value to Current data member. More...
 
TCurrentSetCurrent (void)
 Assign a value to Current data member. More...
 
bool IsSetReference (void) const
 Check if a value has been assigned to Reference data member. More...
 
bool CanGetReference (void) const
 Check if it is safe to call GetReference method. More...
 
void ResetReference (void)
 Reset Reference data member. More...
 
TReference GetReference (void) const
 Get the Reference member data. More...
 
void SetReference (TReference value)
 Assign a value to Reference data member. More...
 
TReferenceSetReference (void)
 Assign a value to Reference data member. More...
 
void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 C_Attlist (const C_Attlist &)
 
C_Attlistoperator= (const C_Attlist &)
 

Private Attributes

Uint4 m_set_State [1]
 
int m_DbSnpBuild
 
string m_GenomeBuild
 
string m_GroupLabel
 
string m_AssemblySource
 
bool m_Current
 
bool m_Reference
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

C_Attlist –.

Definition at line 97 of file Assembly_.hpp.


The documentation for this class was generated from the following files:
Modified on Sun Apr 21 03:41:28 2024 by modify_doxy.py rev. 669887