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CBAMBlobId Class Reference

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#include <sra/data_loaders/bam/impl/bamloader_impl.hpp>

+ Inheritance diagram for CBAMBlobId:
+ Collaboration diagram for CBAMBlobId:

Public Member Functions

 CBAMBlobId (const CTempString &str)
 
 CBAMBlobId (const string &bam_name, const CSeq_id_Handle &seq_id)
 
 ~CBAMBlobId (void)
 
string ToString (void) const
 Get string representation of blob id. More...
 
bool operator< (const CBlobId &id) const
 
bool operator== (const CBlobId &id) const
 
- Public Member Functions inherited from CBlobId
virtual ~CBlobId (void)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Public Attributes

string m_BamName
 
CSeq_id_Handle m_SeqId
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CBlobId
bool LessByTypeId (const CBlobId &id2) const
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 51 of file bamloader_impl.hpp.

Constructor & Destructor Documentation

◆ CBAMBlobId() [1/2]

CBAMBlobId::CBAMBlobId ( const CTempString str)
explicit

Definition at line 384 of file bamloader_impl.cpp.

References CSeq_id_Handle::GetHandle(), m_BamName, m_SeqId, and str().

◆ CBAMBlobId() [2/2]

CBAMBlobId::CBAMBlobId ( const string bam_name,
const CSeq_id_Handle seq_id 
)

Definition at line 393 of file bamloader_impl.cpp.

◆ ~CBAMBlobId()

CBAMBlobId::~CBAMBlobId ( void  )

Definition at line 399 of file bamloader_impl.cpp.

Member Function Documentation

◆ operator<()

bool CBAMBlobId::operator< ( const CBlobId id) const
virtual

Implements CBlobId.

Definition at line 410 of file bamloader_impl.cpp.

References m_BamName, and m_SeqId.

◆ operator==()

bool CBAMBlobId::operator== ( const CBlobId id) const
virtual

Reimplemented from CBlobId.

Definition at line 418 of file bamloader_impl.cpp.

References m_BamName, and m_SeqId.

◆ ToString()

string CBAMBlobId::ToString ( void  ) const
virtual

Get string representation of blob id.

Should be unique for all blob ids from the same data loader.

Implements CBlobId.

Definition at line 404 of file bamloader_impl.cpp.

References CSeq_id_Handle::AsString(), m_BamName, and m_SeqId.

Member Data Documentation

◆ m_BamName

string CBAMBlobId::m_BamName

◆ m_SeqId

CSeq_id_Handle CBAMBlobId::m_SeqId

The documentation for this class was generated from the following files:
Modified on Sun Mar 03 03:10:15 2024 by modify_doxy.py rev. 669887