| AddReference(void) const | CObject | inline |
| AllowMatingTypeQualifier(const string &lineage) | CBioSource | static |
| AllowMatingTypeQualifier() const | CBioSource | |
| AllowSexQualifier(const string &lineage) | CBioSource | static |
| AllowSexQualifier() const | CBioSource | |
| Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSerialObject | virtual |
| AutoFix() | CBioSource | |
| BiosampleDiffsOkForUpdate(const TFieldDiffList &diffs) const | CBioSource | |
| CanBeDeleted(void) const THROWS_NONE | CObject | inline |
| CanGetGenome(void) const | CBioSource_Base | inline |
| CanGetIs_focus(void) const | CBioSource_Base | inline |
| CanGetOrg(void) const | CBioSource_Base | inline |
| CanGetOrigin(void) const | CBioSource_Base | inline |
| CanGetPcr_primers(void) const | CBioSource_Base | inline |
| CanGetSubtype(void) const | CBioSource_Base | inline |
| CBioSource(void) | CBioSource | inline |
| CBioSource(const CBioSource &value) | CBioSource | private |
| CBioSource_Base(void) | CBioSource_Base | |
| CBioSource_Base(const CBioSource_Base &) | CBioSource_Base | private |
| CDebugDumpable(void) | CDebugDumpable | inline |
| CheckReferenceOverflow(TCount count) const | CObject | private |
| CObject(void) | CObject | |
| CObject(const CObject &src) | CObject | |
| CSerialObject(void) | CSerialObject | |
| DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
| DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DECLARE_INTERNAL_TYPE_INFO() | CBioSource_Base | |
| DeleteThis(void) | CObject | protectedvirtual |
| DoDeleteThisObject(void) | CObject | virtual |
| DoNotDeleteThisObject(void) | CObject | virtual |
| DumpToConsole(void) const | CDebugDumpable | |
| E_memberIndex enum name | CBioSource_Base | |
| EAllocFillMode enum name | CObject | |
| eAllocFillNone enum value | CObject | |
| eAllocFillPattern enum value | CObject | |
| eAllocFillZero enum value | CObject | |
| eCounterBitsCanBeDeleted | CObject | static |
| eCounterBitsInPlainHeap | CObject | static |
| eCounterBitsPlaceMask | CObject | static |
| eCounterStateMask | CObject | static |
| eCounterStep | CObject | static |
| eCounterValid | CObject | static |
| EGenome enum name | CBioSource_Base | |
| EGenome(void) | CBioSource_Base | static |
| eGenome_apicoplast enum value | CBioSource_Base | |
| eGenome_chloroplast enum value | CBioSource_Base | |
| eGenome_chromatophore enum value | CBioSource_Base | |
| eGenome_chromoplast enum value | CBioSource_Base | |
| eGenome_chromosome enum value | CBioSource_Base | |
| eGenome_cyanelle enum value | CBioSource_Base | |
| eGenome_endogenous_virus enum value | CBioSource_Base | |
| eGenome_extrachrom enum value | CBioSource_Base | |
| eGenome_genomic enum value | CBioSource_Base | |
| eGenome_hydrogenosome enum value | CBioSource_Base | |
| eGenome_insertion_seq enum value | CBioSource_Base | |
| eGenome_kinetoplast enum value | CBioSource_Base | |
| eGenome_leucoplast enum value | CBioSource_Base | |
| eGenome_macronuclear enum value | CBioSource_Base | |
| eGenome_mitochondrion enum value | CBioSource_Base | |
| eGenome_nucleomorph enum value | CBioSource_Base | |
| eGenome_plasmid enum value | CBioSource_Base | |
| eGenome_plasmid_in_mitochondrion enum value | CBioSource_Base | |
| eGenome_plasmid_in_plastid enum value | CBioSource_Base | |
| eGenome_plastid enum value | CBioSource_Base | |
| eGenome_proplastid enum value | CBioSource_Base | |
| eGenome_proviral enum value | CBioSource_Base | |
| eGenome_transposon enum value | CBioSource_Base | |
| eGenome_unknown enum value | CBioSource_Base | |
| eGenome_virion enum value | CBioSource_Base | |
| EnableDebugDump(bool on) | CDebugDumpable | static |
| EOrigin enum name | CBioSource_Base | |
| EOrigin(void) | CBioSource_Base | static |
| eOrigin_artificial enum value | CBioSource_Base | |
| eOrigin_mut enum value | CBioSource_Base | |
| eOrigin_natmut enum value | CBioSource_Base | |
| eOrigin_natural enum value | CBioSource_Base | |
| eOrigin_other enum value | CBioSource_Base | |
| eOrigin_synthetic enum value | CBioSource_Base | |
| eOrigin_unknown enum value | CBioSource_Base | |
| Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
| FixEnvironmentalSample() | CBioSource | |
| FixGenomeForQualifiers() | CBioSource | |
| FixSexMatingTypeInconsistencies() | CBioSource | |
| GetAllocFillMode(void) | CObject | static |
| GetBioprojectLocation(void) const | CBioSource | |
| GetBioprojectType(void) const | CBioSource | |
| GetBiosampleDiffs(const CBioSource &biosample, bool is_local_copy=false) const | CBioSource | |
| GetCommon(void) const | CBioSource | |
| GetDisableStrainForwarding() const | CBioSource | |
| GetDivision(void) const | CBioSource | |
| GetGcode(void) const | CBioSource | |
| GetGenCode(int def=1) const | CBioSource | |
| GetGenome(void) const | CBioSource_Base | inline |
| GetGenomeByOrganelle(const string &organelle, NStr::ECase use_case=NStr::eCase, bool starts_with=false) | CBioSource | static |
| GetLineage(void) const | CBioSource | |
| GetMgcode(void) const | CBioSource | |
| GetNamespaceName(void) const | CSerialObject | |
| GetNamespacePrefix(void) const | CSerialObject | |
| GetNameValPairs() const | CBioSource | |
| GetOrg(void) const | CBioSource_Base | inline |
| GetOrganelleByGenome(unsigned int genome) | CBioSource | static |
| GetOrgname(void) const | CBioSource | |
| GetOrigin(void) const | CBioSource_Base | inline |
| GetOriginByString(const string &origin, NStr::ECase use_case=NStr::eCase, bool starts_with=false) | CBioSource | static |
| GetPcr_primers(void) const | CBioSource_Base | inline |
| GetPgcode(void) const | CBioSource | |
| GetRepliconName(void) const | CBioSource | |
| GetStringFromOrigin(unsigned int origin) | CBioSource | static |
| GetSubtype(void) const | CBioSource_Base | inline |
| GetTaxname(void) const | CBioSource | |
| GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
| HasNamespaceName(void) const | CSerialObject | |
| HasNamespacePrefix(void) const | CSerialObject | |
| HasSubtype(CSubSource::TSubtype subtype) const | CBioSource | |
| InitCounter(void) | CObject | inlineprivate |
| InvalidObject(void) const | CObject | private |
| IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
| IsSetCommon(void) const | CBioSource | |
| IsSetDivision(void) const | CBioSource | |
| IsSetGcode(void) const | CBioSource | |
| IsSetGenome(void) const | CBioSource_Base | inline |
| IsSetIs_focus(void) const | CBioSource_Base | inline |
| IsSetLineage(void) const | CBioSource | |
| IsSetMgcode(void) const | CBioSource | |
| IsSetOrg(void) const | CBioSource_Base | inline |
| IsSetOrgMod(void) const | CBioSource | |
| IsSetOrgname(void) const | CBioSource | |
| IsSetOrigin(void) const | CBioSource_Base | inline |
| IsSetPcr_primers(void) const | CBioSource_Base | inline |
| IsSetPgcode(void) const | CBioSource | |
| IsSetSubtype(void) const | CBioSource_Base | inline |
| IsSetTaxname(void) const | CBioSource | |
| IsStopWord(const string &value) | CBioSource | static |
| IsViral(const string &lineage) | CBioSource | static |
| IsViral() const | CBioSource | |
| m_Counter | CObject | mutableprivate |
| m_Genome | CBioSource_Base | private |
| m_Org | CBioSource_Base | private |
| m_Origin | CBioSource_Base | private |
| m_Pcr_primers | CBioSource_Base | private |
| m_set_State | CBioSource_Base | private |
| m_Subtype | CBioSource_Base | private |
| MakeCommon(const CBioSource &other) const | CBioSource | |
| MakeCommonExceptOrg(const CBioSource &other) const | CBioSource | |
| ms_UnassignedByte | CSerialObject | static |
| ms_UnassignedStr | CSerialObject | static |
| ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
| ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
| ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
| operator delete(void *ptr) | CObject | |
| operator delete(void *ptr, void *place) | CObject | |
| operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
| operator delete[](void *ptr) | CObject | |
| operator new(size_t size) | CObject | |
| operator new(size_t size, void *place) | CObject | |
| operator new(size_t size, CObjectMemoryPool *place) | CObject | |
| operator new[](size_t size) | CObject | |
| operator=(const CBioSource &value) | CBioSource | private |
| CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
| Referenced(void) const THROWS_NONE | CObject | inline |
| ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
| ReleaseReference(void) const | CObject | |
| RemoveCultureNotes(bool is_species_level=true) | CBioSource | |
| RemoveLastReference(TCount count) const | CObject | private |
| RemoveLineageSourceNotes() | CBioSource | |
| RemoveNullTerms() | CBioSource | |
| RemoveOrgMod(int subtype) | CBioSource | |
| RemoveOrgMod(int subtype, const string &val) | CBioSource | |
| RemoveReference(void) const | CObject | inline |
| RemoveSubSource(int subtype) | CBioSource | |
| RemoveSubSource(int subtype, const string &val) | CBioSource | |
| RemoveUnexpectedViralQualifiers() | CBioSource | |
| Reset(void) | CBioSource_Base | virtual |
| ResetGenome(void) | CBioSource_Base | inline |
| ResetIs_focus(void) | CBioSource_Base | inline |
| ResetOrg(void) | CBioSource_Base | |
| ResetOrigin(void) | CBioSource_Base | inline |
| ResetPcr_primers(void) | CBioSource_Base | |
| ResetSubtype(void) | CBioSource_Base | |
| SetAllocFillMode(EAllocFillMode mode) | CObject | static |
| SetAllocFillMode(const string &value) | CObject | static |
| SetDefaultGenome(void) | CBioSource_Base | inline |
| SetDefaultOrigin(void) | CBioSource_Base | inline |
| SetDisableStrainForwarding(bool val) | CBioSource | |
| SetGenome(TGenome value) | CBioSource_Base | inline |
| SetGenome(void) | CBioSource_Base | inline |
| SetIs_focus(void) | CBioSource_Base | inline |
| SetOrg(TOrg &value) | CBioSource_Base | |
| SetOrg(void) | CBioSource_Base | inline |
| SetOrigin(TOrigin value) | CBioSource_Base | inline |
| SetOrigin(void) | CBioSource_Base | inline |
| SetPcr_primers(TPcr_primers &value) | CBioSource_Base | |
| SetPcr_primers(void) | CBioSource_Base | |
| SetSubtype(void) | CBioSource_Base | inline |
| SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
| SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
| ShouldIgnoreConflict(const string &label, string src_val, string sample_val, bool is_local_copy=false) | CBioSource | static |
| sm_DumpEnabled | CDebugDumpable | privatestatic |
| TCount typedef | CObject | |
| TCounter typedef | CObject | |
| TGenome typedef | CBioSource_Base | |
| ThrowNullPointerException(void) | CObject | static |
| ThrowNullPointerException(const type_info &type) | CObject | static |
| ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
| ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
| TLockerType typedef | CObject | |
| TmemberIndex typedef | CBioSource_Base | |
| TNameVal typedef | CBioSource | |
| TNameValList typedef | CBioSource | |
| TOrg typedef | CBioSource_Base | |
| TOrigin typedef | CBioSource_Base | |
| Tparent typedef | CBioSource | private |
| TPcr_primers typedef | CBioSource_Base | |
| TSubtype typedef | CBioSource_Base | |
| UnassignedByte(void) | CSerialObject | inlinestatic |
| UnassignedString(void) | CSerialObject | inlinestatic |
| UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
| UpdateWithBioSample(const CBioSource &biosample, bool force, bool is_local_copy=false) | CBioSource | |
| x_ClearCoordinatedBioSampleOrgMods() | CBioSource | private |
| x_ClearCoordinatedBioSampleSubSources() | CBioSource | private |
| x_GetOrgModNameValPairs() const | CBioSource | private |
| x_GetSubtypeNameValPairs() const | CBioSource | private |
| x_GetVerifyData(void) | CSerialObject | privatestatic |
| x_InitStopWords(void) | CBioSource | privatestatic |
| x_RemoveNameElementDiffs(const CBioSource &biosample, TFieldDiffList &diff_list) const | CBioSource | private |
| x_RemoveStopWords(COrg_ref &org_ref) | CBioSource | privatestatic |
| x_ShouldIgnoreNoteForBiosample() const | CBioSource | private |
| ~CBioSource(void) | CBioSource | |
| ~CBioSource_Base(void) | CBioSource_Base | virtual |
| ~CDebugDumpable(void) | CDebugDumpable | virtual |
| ~CObject(void) | CObject | virtual |
| ~CSerialObject(void) | CSerialObject | virtual |
