NCBI C++ ToolKit
|
Search Toolkit Book for CBioSource_Base
******************************************************************** More...
#include <objects/seqfeat/BioSource_.hpp>
Public Member Functions | |
CBioSource_Base (void) | |
virtual | ~CBioSource_Base (void) |
DECLARE_INTERNAL_TYPE_INFO () | |
bool | IsSetGenome (void) const |
Check if a value has been assigned to Genome data member. More... | |
bool | CanGetGenome (void) const |
Check if it is safe to call GetGenome method. More... | |
void | ResetGenome (void) |
Reset Genome data member. More... | |
void | SetDefaultGenome (void) |
Assign default value to Genome data member. More... | |
TGenome | GetGenome (void) const |
Get the Genome member data. More... | |
void | SetGenome (TGenome value) |
Assign a value to Genome data member. More... | |
TGenome & | SetGenome (void) |
Assign a value to Genome data member. More... | |
bool | IsSetOrigin (void) const |
Check if a value has been assigned to Origin data member. More... | |
bool | CanGetOrigin (void) const |
Check if it is safe to call GetOrigin method. More... | |
void | ResetOrigin (void) |
Reset Origin data member. More... | |
void | SetDefaultOrigin (void) |
Assign default value to Origin data member. More... | |
TOrigin | GetOrigin (void) const |
Get the Origin member data. More... | |
void | SetOrigin (TOrigin value) |
Assign a value to Origin data member. More... | |
TOrigin & | SetOrigin (void) |
Assign a value to Origin data member. More... | |
bool | IsSetOrg (void) const |
Check if a value has been assigned to Org data member. More... | |
bool | CanGetOrg (void) const |
Check if it is safe to call GetOrg method. More... | |
void | ResetOrg (void) |
Reset Org data member. More... | |
const TOrg & | GetOrg (void) const |
Get the Org member data. More... | |
void | SetOrg (TOrg &value) |
Assign a value to Org data member. More... | |
TOrg & | SetOrg (void) |
Assign a value to Org data member. More... | |
bool | IsSetSubtype (void) const |
Check if a value has been assigned to Subtype data member. More... | |
bool | CanGetSubtype (void) const |
Check if it is safe to call GetSubtype method. More... | |
void | ResetSubtype (void) |
Reset Subtype data member. More... | |
const TSubtype & | GetSubtype (void) const |
Get the Subtype member data. More... | |
TSubtype & | SetSubtype (void) |
Assign a value to Subtype data member. More... | |
bool | IsSetIs_focus (void) const |
to distinguish biological focus Check if a value has been assigned to Is_focus data member. More... | |
bool | CanGetIs_focus (void) const |
Check if value of Is_focus member is getatable. More... | |
void | ResetIs_focus (void) |
Reset Is_focus data member. More... | |
void | SetIs_focus (void) |
Set NULL data member (assign 'NULL' value to Is_focus data member). More... | |
bool | IsSetPcr_primers (void) const |
Check if a value has been assigned to Pcr_primers data member. More... | |
bool | CanGetPcr_primers (void) const |
Check if it is safe to call GetPcr_primers method. More... | |
void | ResetPcr_primers (void) |
Reset Pcr_primers data member. More... | |
const TPcr_primers & | GetPcr_primers (void) const |
Get the Pcr_primers member data. More... | |
void | SetPcr_primers (TPcr_primers &value) |
Assign a value to Pcr_primers data member. More... | |
TPcr_primers & | SetPcr_primers (void) |
Assign a value to Pcr_primers data member. More... | |
virtual void | Reset (void) |
Reset the whole object. More... | |
Public Member Functions inherited from CSerialObject | |
CSerialObject (void) | |
virtual | ~CSerialObject (void) |
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
Set object to copy of another one. More... | |
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
Check if both objects contain the same values. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
void | ThrowUnassigned (TMemberIndex index) const |
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
bool | HasNamespaceName (void) const |
Check if object data type has namespace name. More... | |
const string & | GetNamespaceName (void) const |
Get namespace name. More... | |
bool | HasNamespacePrefix (void) const |
Check if data type has namespace prefix. More... | |
const string & | GetNamespacePrefix (void) const |
Get namespace prefix. More... | |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Static Public Member Functions | |
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EGenome (void) |
Access to EGenome's attributes (values, names) as defined in spec. More... | |
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EOrigin (void) |
Access to EOrigin's attributes (values, names) as defined in spec. More... | |
Static Public Member Functions inherited from CSerialObject | |
static void | SetVerifyDataThread (ESerialVerifyData verify) |
static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
static string | UnassignedString (void) |
static CStringUTF8 | UnassignedStringUTF8 (void) |
static char | UnassignedByte (void) |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Private Types | |
typedef CSerialObject | Tparent |
Private Member Functions | |
CBioSource_Base (const CBioSource_Base &) | |
CBioSource_Base & | operator= (const CBioSource_Base &) |
Private Attributes | |
Uint4 | m_set_State [1] |
int | m_Genome |
int | m_Origin |
CRef< TOrg > | m_Org |
list< CRef< CSubSource > > | m_Subtype |
CRef< TPcr_primers > | m_Pcr_primers |
Additional Inherited Members | |
Static Public Attributes inherited from CSerialObject | |
static const char * | ms_UnassignedStr = "<*unassigned*>" |
static const char | ms_UnassignedByte = char(0xcd) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
********************************************************************
BioSource gives the source of the biological material for sequences
********************************************************************
Definition at line 84 of file BioSource_.hpp.