NCBI C++ ToolKit
Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type Biostruc-seq defined in file ncbimime.asn

Search Toolkit Book for CBiostruc_seq_Base

display structure seq added by yanli More...

#include <objects/ncbimime/Biostruc_seq_.hpp>

+ Inheritance diagram for CBiostruc_seq_Base:
+ Collaboration diagram for CBiostruc_seq_Base:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_structure , e_sequences , e_style_dictionary ,
  e_user_annotations
}
 
typedef CBiostruc TStructure
 
typedef list< CRef< CSeq_entry > > TSequences
 
typedef CCn3d_style_dictionary TStyle_dictionary
 
typedef CCn3d_user_annotations TUser_annotations
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CBiostruc_seq_Base (void)
 
virtual ~CBiostruc_seq_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetStructure (void) const
 Check if a value has been assigned to Structure data member. More...
 
bool CanGetStructure (void) const
 Check if it is safe to call GetStructure method. More...
 
void ResetStructure (void)
 Reset Structure data member. More...
 
const TStructureGetStructure (void) const
 Get the Structure member data. More...
 
void SetStructure (TStructure &value)
 Assign a value to Structure data member. More...
 
TStructureSetStructure (void)
 Assign a value to Structure data member. More...
 
bool IsSetSequences (void) const
 Check if a value has been assigned to Sequences data member. More...
 
bool CanGetSequences (void) const
 Check if it is safe to call GetSequences method. More...
 
void ResetSequences (void)
 Reset Sequences data member. More...
 
const TSequencesGetSequences (void) const
 Get the Sequences member data. More...
 
TSequencesSetSequences (void)
 Assign a value to Sequences data member. More...
 
bool IsSetStyle_dictionary (void) const
 Check if a value has been assigned to Style_dictionary data member. More...
 
bool CanGetStyle_dictionary (void) const
 Check if it is safe to call GetStyle_dictionary method. More...
 
void ResetStyle_dictionary (void)
 Reset Style_dictionary data member. More...
 
const TStyle_dictionaryGetStyle_dictionary (void) const
 Get the Style_dictionary member data. More...
 
void SetStyle_dictionary (TStyle_dictionary &value)
 Assign a value to Style_dictionary data member. More...
 
TStyle_dictionarySetStyle_dictionary (void)
 Assign a value to Style_dictionary data member. More...
 
bool IsSetUser_annotations (void) const
 Check if a value has been assigned to User_annotations data member. More...
 
bool CanGetUser_annotations (void) const
 Check if it is safe to call GetUser_annotations method. More...
 
void ResetUser_annotations (void)
 Reset User_annotations data member. More...
 
const TUser_annotationsGetUser_annotations (void) const
 Get the User_annotations member data. More...
 
void SetUser_annotations (TUser_annotations &value)
 Assign a value to User_annotations data member. More...
 
TUser_annotationsSetUser_annotations (void)
 Assign a value to User_annotations data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CBiostruc_seq_Base (const CBiostruc_seq_Base &)
 
CBiostruc_seq_Baseoperator= (const CBiostruc_seq_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
CRef< TStructurem_Structure
 
list< CRef< CSeq_entry > > m_Sequences
 
CRef< TStyle_dictionarym_Style_dictionary
 
CRef< TUser_annotationsm_User_annotations
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

display structure seq added by yanli

CBiostruc_seq_Base

Definition at line 80 of file Biostruc_seq_.hpp.


The documentation for this class was generated from the following files:
Modified on Sat May 25 14:22:07 2024 by modify_doxy.py rev. 669887