| AddReference(void) const | CObject | inline |
| CanBeDeleted(void) const THROWS_NONE | CObject | inline |
| CBlastFastaInputSource(CNcbiIstream &infile, const CBlastInputSourceConfig &iconfig) | CBlastFastaInputSource | |
| CBlastFastaInputSource(const string &user_input, const CBlastInputSourceConfig &iconfig) | CBlastFastaInputSource | |
| CDebugDumpable(void) | CDebugDumpable | inline |
| CheckReferenceOverflow(TCount count) const | CObject | private |
| CObject(void) | CObject | |
| CObject(const CObject &src) | CObject | |
| DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CObject | virtual |
| DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DeleteThis(void) | CObject | protectedvirtual |
| DoDeleteThisObject(void) | CObject | virtual |
| DoNotDeleteThisObject(void) | CObject | virtual |
| DumpToConsole(void) const | CDebugDumpable | |
| EAllocFillMode enum name | CObject | |
| eAllocFillNone enum value | CObject | |
| eAllocFillPattern enum value | CObject | |
| eAllocFillZero enum value | CObject | |
| eCounterBitsCanBeDeleted | CObject | static |
| eCounterBitsInPlainHeap | CObject | static |
| eCounterBitsPlaceMask | CObject | static |
| eCounterStateMask | CObject | static |
| eCounterStep | CObject | static |
| eCounterValid | CObject | static |
| EnableDebugDump(bool on) | CDebugDumpable | static |
| End() | CBlastFastaInputSource | protectedvirtual |
| GetAllocFillMode(void) | CObject | static |
| GetNextSequence(CScope &scope) | CBlastFastaInputSource | protectedvirtual |
| GetNextSSeqLoc(CScope &scope) | CBlastFastaInputSource | protectedvirtual |
| InitCounter(void) | CObject | inlineprivate |
| InvalidObject(void) const | CObject | private |
| IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
| m_Config | CBlastFastaInputSource | private |
| m_Counter | CObject | mutableprivate |
| m_InputReader | CBlastFastaInputSource | private |
| m_LineReader | CBlastFastaInputSource | private |
| m_ReadProteins | CBlastFastaInputSource | private |
| ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
| ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
| ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
| operator delete(void *ptr) | CObject | |
| operator delete(void *ptr, void *place) | CObject | |
| operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
| operator delete[](void *ptr) | CObject | |
| operator new(size_t size) | CObject | |
| operator new(size_t size, void *place) | CObject | |
| operator new(size_t size, CObjectMemoryPool *place) | CObject | |
| operator new[](size_t size) | CObject | |
| operator=(const CObject &src) THROWS_NONE | CObject | inline |
| Referenced(void) const THROWS_NONE | CObject | inline |
| ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
| ReleaseReference(void) const | CObject | |
| RemoveLastReference(TCount count) const | CObject | private |
| RemoveReference(void) const | CObject | inline |
| SetAllocFillMode(EAllocFillMode mode) | CObject | static |
| SetAllocFillMode(const string &value) | CObject | static |
| sm_DumpEnabled | CDebugDumpable | privatestatic |
| TCount typedef | CObject | |
| TCounter typedef | CObject | |
| ThrowNullPointerException(void) | CObject | static |
| ThrowNullPointerException(const type_info &type) | CObject | static |
| TLockerType typedef | CObject | |
| x_FastaToSeqLoc(CRef< objects::CSeq_loc > &lcase_mask, CScope &scope) | CBlastFastaInputSource | private |
| x_InitInputReader() | CBlastFastaInputSource | private |
| ~CBlastFastaInputSource() | CBlastFastaInputSource | inlinevirtual |
| ~CBlastInputSource() | CBlastInputSource | inlineprotectedvirtual |
| ~CDebugDumpable(void) | CDebugDumpable | virtual |
| ~CObject(void) | CObject | virtual |
