CBlastSeqUtil Class Reference

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#include <objtools/blast/blastdb_format/blastdb_dataextract.hpp>

Static Public Member Functions
static Uint4	GetSeqHash (const char *buffer, int length)
static void	ApplySeqMask (string &seq, const CSeqDB::TSequenceRanges &masks, const TSeqRange r=TSeqRange::GetEmpty())
static void	GetReverseStrandSeq (string &seq)
static string	GetMasksString (const CSeqDB::TSequenceRanges &masks)

Detailed Description

Definition at line 238 of file blastdb_dataextract.hpp.

Member Function Documentation

ApplySeqMask()

void CBlastSeqUtil::ApplySeqMask ( string &  seq, const CSeqDB::TSequenceRanges &  masks, const TSeqRange  r = TSeqRange::GetEmpty()  )

static

Definition at line 1048 of file blastdb_dataextract.cpp.

Referenced by CBlastDB_SeqFormatter::x_GetSeq().

GetMasksString()

string CBlastSeqUtil::GetMasksString ( const CSeqDB::TSequenceRanges &  masks )

static

Definition at line 1077 of file blastdb_dataextract.cpp.

Referenced by CBlastDB_SeqFormatter::x_GetSeqMask().

GetReverseStrandSeq()

void CBlastSeqUtil::GetReverseStrandSeq ( string &  seq )

static

Definition at line 1072 of file blastdb_dataextract.cpp.

Referenced by CBlastDB_SeqFormatter::x_GetSeq().

GetSeqHash()

Uint4 CBlastSeqUtil::GetSeqHash ( const char *  buffer, int  length  )

static

Definition at line 1037 of file blastdb_dataextract.cpp.

Referenced by CBlastDBExtractor::ExtractHash(), and CBlastDB_SeqFormatter::x_GetSeqHash().

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The documentation for this class was generated from the following files:

• include/objtools/blast/blastdb_format/blastdb_dataextract.hpp
• src/objtools/blast/blastdb_format/blastdb_dataextract.cpp