Search Toolkit Book for CBulkCDSAddPanel

#include <gui/packages/pkg_sequence_edit/bulkcdsaddpanel.hpp>

Inheritance diagram for CBulkCDSAddPanel:

Collaboration diagram for CBulkCDSAddPanel:

Public Member Functions
	CBulkCDSAddPanel ()
	Constructors. More...

	CBulkCDSAddPanel (wxWindow *parent, objects::CSeq_entry_Handle seh, bool add_location_panel=true, wxWindowID id=10030, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

bool	Create (wxWindow *parent, wxWindowID id=10030, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
	Creation. More...

	~CBulkCDSAddPanel ()
	Destructor. More...

void	Init ()
	Initialises member variables. More...

void	CreateControls ()
	Creates the controls and sizers. More...

wxBitmap	GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...

wxIcon	GetIconResource (const wxString &name)
	Retrieves icon resources. More...

virtual CRef< CCmdComposite >	GetCommand ()

virtual string	GetErrorMessage ()

virtual void	AddOneCommand (const objects::CBioseq_Handle &bsh, CRef< CCmdComposite > cmd, bool &ambiguous)

Public Member Functions inherited from CBulkCmdPanel
	CBulkCmdPanel ()
	Constructors. More...

	CBulkCmdPanel (bool add_location_panel)

virtual	~CBulkCmdPanel ()
	Destructor. More...

void	SetLoc (CRef< objects::CSeq_loc > loc)

virtual void	AddOneCommand (const objects::CBioseq_Handle &bsh, CRef< CCmdComposite > cmd)

Static Public Member Functions
static bool	ShowToolTips ()
	Should we show tooltips? More...

Public Attributes
wxTextCtrl *	m_ProteinName

wxTextCtrl *	m_ProteinDescription

wxTextCtrl *	m_GeneSymbol

wxTextCtrl *	m_Comment

Private Attributes
objects::CSeq_entry_Handle	m_TopSeqEntry

wxChoice *	m_CodonStart

wxCheckBox *	m_AddmRNA

bool	m_create_general_only

Additional Inherited Members
Protected Member Functions inherited from CBulkCmdPanel
virtual bool	ShouldAddToExisting ()

virtual CRef< objects::CSeq_loc >	GetLocForBioseq (const objects::CBioseq &bioseq)

Protected Attributes inherited from CBulkCmdPanel
bool	m_add_location_panel

CRef< objects::CSeq_loc >	m_loc

CBulkLocationPanel *	m_Location

Detailed Description

CBulkCDSAddPanel class declaration

Definition at line 84 of file bulkcdsaddpanel.hpp.

Constructor & Destructor Documentation

◆ CBulkCDSAddPanel() [1/2]

CBulkCDSAddPanel::CBulkCDSAddPanel ( )

Constructors.

CBulkCDSAddPanel type definition

CBulkCDSAddPanel event table definition

CBulkCDSAddPanel constructors

Definition at line 79 of file bulkcdsaddpanel.cpp.

References Init().

◆ CBulkCDSAddPanel() [2/2]

CBulkCDSAddPanel::CBulkCDSAddPanel	(	wxWindow *	parent,
		objects::CSeq_entry_Handle	seh,
		bool	add_location_panel = `true`,
		wxWindowID	id = `10030`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(400, 300)`,
		long	style = `wxTAB_TRAVERSAL`
	)

Definition at line 84 of file bulkcdsaddpanel.cpp.

References Create(), Init(), and ncbi::grid::netcache::search::fields::size.

◆ ~CBulkCDSAddPanel()

CBulkCDSAddPanel::~CBulkCDSAddPanel ( )

Destructor.

CBulkCDSAddPanel destructor

Definition at line 116 of file bulkcdsaddpanel.cpp.

Member Function Documentation

◆ AddOneCommand()

void CBulkCDSAddPanel::AddOneCommand	(	const objects::CBioseq_Handle &	bsh,
		CRef< CCmdComposite >	cmd,
		bool &	ambiguous
	)

virtual

Definition at line 282 of file bulkcdsaddpanel.cpp.

References AddProteinFeatureToProtein(), AlreadyHasFeature(), cleanup(), cmd, CreateTranslatedProteinSequence(), eExtreme_Biological, CCdregion_Base::eFrame_not_set, CCdregion_Base::eFrame_one, CCdregion_Base::eFrame_three, CCdregion_Base::eFrame_two, CRNA_ref_Base::eType_mRNA, CBioseq_Handle::GetCompleteBioseq(), GetGeneticCodeForBioseq(), CSeq_feat_Base::GetLocation(), CBulkCmdPanel::GetLocForBioseq(), CBioseq_Handle::GetScope(), CBioseq_Handle::GetSeq_entry_Handle(), NStr::IsBlank(), CSeq_loc::IsPartialStart(), CSeq_loc::IsPartialStop(), m_AddmRNA, m_CodonStart, m_Comment, m_create_general_only, m_GeneSymbol, m_ProteinDescription, m_ProteinName, prot, CSeq_feat_Base::SetData(), CSeq_feat_Base::SetLocation(), CSeq_feat_Base::SetPartial(), CBulkCmdPanel::ShouldAddToExisting(), and ToStdString().

Referenced by GetCommand().

◆ Create()

bool CBulkCDSAddPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = `10030`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxSize(400, 300)`,
		long	style = `wxTAB_TRAVERSAL`
	)

Creation.

CBulkCDSAddPanel creator

Definition at line 96 of file bulkcdsaddpanel.cpp.

References CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CBulkCDSAddPanel().

◆ CreateControls()

void CBulkCDSAddPanel::CreateControls ( )

Creates the controls and sizers.

Control creation for CBulkCDSAddPanel

Definition at line 145 of file bulkcdsaddpanel.cpp.

References _, ID_BULKCDSADD_COMMENT, ID_BULKCDSADD_GENE, ID_BULKCDSADD_PROTEIN_DESC, ID_BULKCDSADD_PROTEIN_NAME, ID_WINDOW, CBulkCmdPanel::m_add_location_panel, m_AddmRNA, m_CodonStart, m_Comment, m_GeneSymbol, CBulkCmdPanel::m_Location, m_ProteinDescription, m_ProteinName, and wxID_ANY.

Referenced by Create().

◆ GetBitmapResource()

wxBitmap CBulkCDSAddPanel::GetBitmapResource ( const wxString & name )

Retrieves bitmap resources.

Get bitmap resources

Definition at line 222 of file bulkcdsaddpanel.cpp.

◆ GetCommand()

CRef< CCmdComposite > CBulkCDSAddPanel::GetCommand ( void )

virtual

Implements CBulkCmdPanel.

Definition at line 245 of file bulkcdsaddpanel.cpp.

References AddOneCommand(), cmd, CSeq_id::eContent, eGetId_Best, ctll::empty(), GetId(), CSeq_id::GetLabel(), CSeq_id_Handle::GetSeqId(), NStr::IsBlank(), IsGeneralIdProtPresent(), NStr::Join(), m_create_general_only, m_ProteinName, m_TopSeqEntry, NULL, CGenericReportDlg::SetText(), ToStdString(), NStr::ULongToString(), and wxT.

◆ GetErrorMessage()

string CBulkCDSAddPanel::GetErrorMessage ( )

virtual

Implements CBulkCmdPanel.

Definition at line 376 of file bulkcdsaddpanel.cpp.

References NStr::IsBlank(), m_ProteinName, and ToStdString().

◆ GetIconResource()

wxIcon CBulkCDSAddPanel::GetIconResource ( const wxString & name )

Retrieves icon resources.

Get icon resources

Definition at line 235 of file bulkcdsaddpanel.cpp.

◆ Init()

void CBulkCDSAddPanel::Init ( void )

Initialises member variables.

Member initialisation

Definition at line 127 of file bulkcdsaddpanel.cpp.

References m_AddmRNA, m_CodonStart, m_Comment, m_GeneSymbol, CBulkCmdPanel::m_Location, m_ProteinDescription, m_ProteinName, and NULL.

Referenced by CBulkCDSAddPanel().

◆ ShowToolTips()

bool CBulkCDSAddPanel::ShowToolTips ( )

static

Should we show tooltips?

Definition at line 213 of file bulkcdsaddpanel.cpp.

Member Data Documentation

◆ m_AddmRNA

wxCheckBox* CBulkCDSAddPanel::m_AddmRNA

private

Definition at line 135 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), and Init().

◆ m_CodonStart

wxChoice* CBulkCDSAddPanel::m_CodonStart

private

Definition at line 134 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), and Init().

◆ m_Comment

wxTextCtrl* CBulkCDSAddPanel::m_Comment

Definition at line 126 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), and Init().

◆ m_create_general_only

bool CBulkCDSAddPanel::m_create_general_only

private

Definition at line 136 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), and GetCommand().

◆ m_GeneSymbol

wxTextCtrl* CBulkCDSAddPanel::m_GeneSymbol

Definition at line 125 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), and Init().

◆ m_ProteinDescription

wxTextCtrl* CBulkCDSAddPanel::m_ProteinDescription

Definition at line 124 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), and Init().

◆ m_ProteinName

wxTextCtrl* CBulkCDSAddPanel::m_ProteinName

Definition at line 123 of file bulkcdsaddpanel.hpp.

Referenced by AddOneCommand(), CreateControls(), GetCommand(), GetErrorMessage(), and Init().

◆ m_TopSeqEntry

objects::CSeq_entry_Handle CBulkCDSAddPanel::m_TopSeqEntry

private

Definition at line 133 of file bulkcdsaddpanel.hpp.

Referenced by GetCommand().

The documentation for this class was generated from the following files:

include/gui/packages/pkg_sequence_edit/bulkcdsaddpanel.hpp
src/gui/packages/pkg_sequence_edit/bulkcdsaddpanel.cpp

Public Member Functions

Static Public Member Functions

Public Attributes

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CBulkCDSAddPanel() [1/2]

◆ CBulkCDSAddPanel() [2/2]

◆ ~CBulkCDSAddPanel()

Member Function Documentation

◆ AddOneCommand()

◆ Create()

◆ CreateControls()

◆ GetBitmapResource()

◆ GetCommand()

◆ GetErrorMessage()

◆ GetIconResource()

◆ Init()

◆ ShowToolTips()

Member Data Documentation

◆ m_AddmRNA

◆ m_CodonStart

◆ m_Comment

◆ m_create_general_only

◆ m_GeneSymbol

◆ m_ProteinDescription

◆ m_ProteinName

◆ m_TopSeqEntry