| AddReference(void) const | CObject | inline |
| Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive) | CSerialObject | virtual |
| CanBeDeleted(void) const THROWS_NONE | CObject | inline |
| CanGetAlignannot(void) const | CCdd_Base | inline |
| CanGetAncestors(void) const | CCdd_Base | inline |
| CanGetChildren(void) const | CCdd_Base | inline |
| CanGetDescription(void) const | CCdd_Base | inline |
| CanGetDistance(void) const | CCdd_Base | inline |
| CanGetFeatures(void) const | CCdd_Base | inline |
| CanGetId(void) const | CCdd_Base | inline |
| CanGetMaster3d(void) const | CCdd_Base | inline |
| CanGetName(void) const | CCdd_Base | inline |
| CanGetNeighbors(void) const | CCdd_Base | inline |
| CanGetParent(void) const | CCdd_Base | inline |
| CanGetPending(void) const | CCdd_Base | inline |
| CanGetPosfreq(void) const | CCdd_Base | inline |
| CanGetProfile_range(void) const | CCdd_Base | inline |
| CanGetRejects(void) const | CCdd_Base | inline |
| CanGetScoremat(void) const | CCdd_Base | inline |
| CanGetScoreparams(void) const | CCdd_Base | inline |
| CanGetSeqannot(void) const | CCdd_Base | inline |
| CanGetSeqtree(void) const | CCdd_Base | inline |
| CanGetSequences(void) const | CCdd_Base | inline |
| CanGetSiblings(void) const | CCdd_Base | inline |
| CanGetStyle_dictionary(void) const | CCdd_Base | inline |
| CanGetTrunc_master(void) const | CCdd_Base | inline |
| CanGetUser_annotations(void) const | CCdd_Base | inline |
| CCdd(void) | CCdd | inline |
| CCdd(const CCdd &value) | CCdd | private |
| CCdd_Base(void) | CCdd_Base | |
| CCdd_Base(const CCdd_Base &) | CCdd_Base | private |
| CDebugDumpable(void) | CDebugDumpable | inline |
| CheckReferenceOverflow(TCount count) const | CObject | private |
| CObject(void) | CObject | |
| CObject(const CObject &src) | CObject | |
| CSerialObject(void) | CSerialObject | |
| DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CSerialObject | virtual |
| DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DECLARE_INTERNAL_TYPE_INFO() | CCdd_Base | |
| DeleteThis(void) | CObject | protectedvirtual |
| DoDeleteThisObject(void) | CObject | virtual |
| DoNotDeleteThisObject(void) | CObject | virtual |
| DumpToConsole(void) const | CDebugDumpable | |
| E_memberIndex enum name | CCdd_Base | |
| EAllocFillMode enum name | CObject | |
| eAllocFillNone enum value | CObject | |
| eAllocFillPattern enum value | CObject | |
| eAllocFillZero enum value | CObject | |
| eCounterBitsCanBeDeleted | CObject | static |
| eCounterBitsInPlainHeap | CObject | static |
| eCounterBitsPlaceMask | CObject | static |
| eCounterStateMask | CObject | static |
| eCounterStep | CObject | static |
| eCounterValid | CObject | static |
| EnableDebugDump(bool on) | CDebugDumpable | static |
| Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const | CSerialObject | virtual |
| GetAlignannot(void) const | CCdd_Base | inline |
| GetAllocFillMode(void) | CObject | static |
| GetAncestors(void) const | CCdd_Base | inline |
| GetChildren(void) const | CCdd_Base | inline |
| GetDescription(void) const | CCdd_Base | inline |
| GetDistance(void) const | CCdd_Base | inline |
| GetFeatures(void) const | CCdd_Base | inline |
| GetId(void) const | CCdd_Base | inline |
| GetMaster3d(void) const | CCdd_Base | inline |
| GetName(void) const | CCdd_Base | inline |
| GetNamespaceName(void) const | CSerialObject | |
| GetNamespacePrefix(void) const | CSerialObject | |
| GetNeighbors(void) const | CCdd_Base | inline |
| GetParent(void) const | CCdd_Base | inline |
| GetPending(void) const | CCdd_Base | inline |
| GetPosfreq(void) const | CCdd_Base | inline |
| GetProfile_range(void) const | CCdd_Base | inline |
| GetRejects(void) const | CCdd_Base | inline |
| GetScoremat(void) const | CCdd_Base | inline |
| GetScoreparams(void) const | CCdd_Base | inline |
| GetSeqannot(void) const | CCdd_Base | inline |
| GetSeqtree(void) const | CCdd_Base | inline |
| GetSequences(void) const | CCdd_Base | inline |
| GetSiblings(void) const | CCdd_Base | inline |
| GetStyle_dictionary(void) const | CCdd_Base | inline |
| GetThisTypeInfo(void) const =0 | CSerialObject | pure virtual |
| GetTrunc_master(void) const | CCdd_Base | inline |
| GetUser_annotations(void) const | CCdd_Base | inline |
| HasNamespaceName(void) const | CSerialObject | |
| HasNamespacePrefix(void) const | CSerialObject | |
| InitCounter(void) | CObject | inlineprivate |
| InvalidObject(void) const | CObject | private |
| IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
| IsSetAlignannot(void) const | CCdd_Base | inline |
| IsSetAncestors(void) const | CCdd_Base | inline |
| IsSetChildren(void) const | CCdd_Base | inline |
| IsSetDescription(void) const | CCdd_Base | inline |
| IsSetDistance(void) const | CCdd_Base | inline |
| IsSetFeatures(void) const | CCdd_Base | inline |
| IsSetId(void) const | CCdd_Base | inline |
| IsSetMaster3d(void) const | CCdd_Base | inline |
| IsSetName(void) const | CCdd_Base | inline |
| IsSetNeighbors(void) const | CCdd_Base | inline |
| IsSetParent(void) const | CCdd_Base | inline |
| IsSetPending(void) const | CCdd_Base | inline |
| IsSetPosfreq(void) const | CCdd_Base | inline |
| IsSetProfile_range(void) const | CCdd_Base | inline |
| IsSetRejects(void) const | CCdd_Base | inline |
| IsSetScoremat(void) const | CCdd_Base | inline |
| IsSetScoreparams(void) const | CCdd_Base | inline |
| IsSetSeqannot(void) const | CCdd_Base | inline |
| IsSetSeqtree(void) const | CCdd_Base | inline |
| IsSetSequences(void) const | CCdd_Base | inline |
| IsSetSiblings(void) const | CCdd_Base | inline |
| IsSetStyle_dictionary(void) const | CCdd_Base | inline |
| IsSetTrunc_master(void) const | CCdd_Base | inline |
| IsSetUser_annotations(void) const | CCdd_Base | inline |
| m_Alignannot | CCdd_Base | private |
| m_Ancestors | CCdd_Base | private |
| m_Children | CCdd_Base | private |
| m_Counter | CObject | mutableprivate |
| m_Description | CCdd_Base | private |
| m_Distance | CCdd_Base | private |
| m_Features | CCdd_Base | private |
| m_Id | CCdd_Base | private |
| m_Master3d | CCdd_Base | private |
| m_Name | CCdd_Base | private |
| m_Neighbors | CCdd_Base | private |
| m_Parent | CCdd_Base | private |
| m_Pending | CCdd_Base | private |
| m_Posfreq | CCdd_Base | private |
| m_Profile_range | CCdd_Base | private |
| m_Rejects | CCdd_Base | private |
| m_Scoremat | CCdd_Base | private |
| m_Scoreparams | CCdd_Base | private |
| m_Seqannot | CCdd_Base | private |
| m_Seqtree | CCdd_Base | private |
| m_Sequences | CCdd_Base | private |
| m_set_State | CCdd_Base | private |
| m_Siblings | CCdd_Base | private |
| m_Style_dictionary | CCdd_Base | private |
| m_Trunc_master | CCdd_Base | private |
| m_User_annotations | CCdd_Base | private |
| ms_UnassignedByte | CSerialObject | static |
| ms_UnassignedStr | CSerialObject | static |
| ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
| ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
| ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
| operator delete(void *ptr) | CObject | |
| operator delete(void *ptr, void *place) | CObject | |
| operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
| operator delete[](void *ptr) | CObject | |
| operator new(size_t size) | CObject | |
| operator new(size_t size, void *place) | CObject | |
| operator new(size_t size, CObjectMemoryPool *place) | CObject | |
| operator new[](size_t size) | CObject | |
| operator=(const CCdd &value) | CCdd | private |
| CSerialObject::operator=(const CObject &src) THROWS_NONE | CObject | inline |
| Referenced(void) const THROWS_NONE | CObject | inline |
| ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
| ReleaseReference(void) const | CObject | |
| RemoveLastReference(TCount count) const | CObject | private |
| RemoveReference(void) const | CObject | inline |
| Reset(void) | CCdd_Base | virtual |
| ResetAlignannot(void) | CCdd_Base | |
| ResetAncestors(void) | CCdd_Base | |
| ResetChildren(void) | CCdd_Base | |
| ResetDescription(void) | CCdd_Base | |
| ResetDistance(void) | CCdd_Base | |
| ResetFeatures(void) | CCdd_Base | |
| ResetId(void) | CCdd_Base | |
| ResetMaster3d(void) | CCdd_Base | |
| ResetName(void) | CCdd_Base | |
| ResetNeighbors(void) | CCdd_Base | |
| ResetParent(void) | CCdd_Base | |
| ResetPending(void) | CCdd_Base | |
| ResetPosfreq(void) | CCdd_Base | |
| ResetProfile_range(void) | CCdd_Base | |
| ResetRejects(void) | CCdd_Base | |
| ResetScoremat(void) | CCdd_Base | |
| ResetScoreparams(void) | CCdd_Base | |
| ResetSeqannot(void) | CCdd_Base | |
| ResetSeqtree(void) | CCdd_Base | |
| ResetSequences(void) | CCdd_Base | |
| ResetSiblings(void) | CCdd_Base | |
| ResetStyle_dictionary(void) | CCdd_Base | |
| ResetTrunc_master(void) | CCdd_Base | |
| ResetUser_annotations(void) | CCdd_Base | |
| SetAlignannot(TAlignannot &value) | CCdd_Base | |
| SetAlignannot(void) | CCdd_Base | |
| SetAllocFillMode(EAllocFillMode mode) | CObject | static |
| SetAllocFillMode(const string &value) | CObject | static |
| SetAncestors(void) | CCdd_Base | inline |
| SetChildren(TChildren &value) | CCdd_Base | |
| SetChildren(void) | CCdd_Base | |
| SetDescription(TDescription &value) | CCdd_Base | |
| SetDescription(void) | CCdd_Base | |
| SetDistance(TDistance &value) | CCdd_Base | |
| SetDistance(void) | CCdd_Base | |
| SetFeatures(TFeatures &value) | CCdd_Base | |
| SetFeatures(void) | CCdd_Base | |
| SetId(TId &value) | CCdd_Base | |
| SetId(void) | CCdd_Base | inline |
| SetMaster3d(void) | CCdd_Base | inline |
| SetName(const TName &value) | CCdd_Base | inline |
| SetName(TName &&value) | CCdd_Base | inline |
| SetName(void) | CCdd_Base | inline |
| SetNeighbors(TNeighbors &value) | CCdd_Base | |
| SetNeighbors(void) | CCdd_Base | |
| SetParent(TParent &value) | CCdd_Base | |
| SetParent(void) | CCdd_Base | |
| SetPending(void) | CCdd_Base | inline |
| SetPosfreq(TPosfreq &value) | CCdd_Base | |
| SetPosfreq(void) | CCdd_Base | |
| SetProfile_range(TProfile_range &value) | CCdd_Base | |
| SetProfile_range(void) | CCdd_Base | |
| SetRejects(void) | CCdd_Base | inline |
| SetScoremat(TScoremat &value) | CCdd_Base | |
| SetScoremat(void) | CCdd_Base | |
| SetScoreparams(TScoreparams &value) | CCdd_Base | |
| SetScoreparams(void) | CCdd_Base | |
| SetSeqannot(void) | CCdd_Base | inline |
| SetSeqtree(TSeqtree &value) | CCdd_Base | |
| SetSeqtree(void) | CCdd_Base | |
| SetSequences(TSequences &value) | CCdd_Base | |
| SetSequences(void) | CCdd_Base | |
| SetSiblings(TSiblings &value) | CCdd_Base | |
| SetSiblings(void) | CCdd_Base | |
| SetStyle_dictionary(TStyle_dictionary &value) | CCdd_Base | |
| SetStyle_dictionary(void) | CCdd_Base | |
| SetTrunc_master(TTrunc_master &value) | CCdd_Base | |
| SetTrunc_master(void) | CCdd_Base | |
| SetUser_annotations(TUser_annotations &value) | CCdd_Base | |
| SetUser_annotations(void) | CCdd_Base | |
| SetVerifyDataGlobal(ESerialVerifyData verify) | CSerialObject | static |
| SetVerifyDataThread(ESerialVerifyData verify) | CSerialObject | static |
| sm_DumpEnabled | CDebugDumpable | privatestatic |
| TAlignannot typedef | CCdd_Base | |
| TAncestors typedef | CCdd_Base | |
| TChildren typedef | CCdd_Base | |
| TCount typedef | CObject | |
| TCounter typedef | CObject | |
| TDescription typedef | CCdd_Base | |
| TDistance typedef | CCdd_Base | |
| TFeatures typedef | CCdd_Base | |
| ThrowNullPointerException(void) | CObject | static |
| ThrowNullPointerException(const type_info &type) | CObject | static |
| ThrowUnassigned(TMemberIndex index) const | CSerialObject | |
| ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) const | CSerialObject | |
| TId typedef | CCdd_Base | |
| TLockerType typedef | CObject | |
| TMaster3d typedef | CCdd_Base | |
| TmemberIndex typedef | CCdd_Base | |
| TName typedef | CCdd_Base | |
| TNeighbors typedef | CCdd_Base | |
| TParent typedef | CCdd_Base | |
| Tparent typedef | CCdd | private |
| TPending typedef | CCdd_Base | |
| TPosfreq typedef | CCdd_Base | |
| TProfile_range typedef | CCdd_Base | |
| TRejects typedef | CCdd_Base | |
| TScoremat typedef | CCdd_Base | |
| TScoreparams typedef | CCdd_Base | |
| TSeqannot typedef | CCdd_Base | |
| TSeqtree typedef | CCdd_Base | |
| TSequences typedef | CCdd_Base | |
| TSiblings typedef | CCdd_Base | |
| TStyle_dictionary typedef | CCdd_Base | |
| TTrunc_master typedef | CCdd_Base | |
| TUser_annotations typedef | CCdd_Base | |
| UnassignedByte(void) | CSerialObject | inlinestatic |
| UnassignedString(void) | CSerialObject | inlinestatic |
| UnassignedStringUTF8(void) | CSerialObject | inlinestatic |
| x_GetVerifyData(void) | CSerialObject | privatestatic |
| ~CCdd(void) | CCdd | |
| ~CCdd_Base(void) | CCdd_Base | virtual |
| ~CDebugDumpable(void) | CDebugDumpable | virtual |
| ~CObject(void) | CObject | virtual |
| ~CSerialObject(void) | CSerialObject | virtual |
