Search Toolkit Book for CChangePhyloPropertyCmd

Inheritance diagram for CChangePhyloPropertyCmd:

Collaboration diagram for CChangePhyloPropertyCmd:

Public Types
typedef CBioTreeContainer::TFdict	TContainerDict

typedef TContainerDict::Tdata::value_type::element_type	TCFeatureDescr

typedef CBioTreeContainer::TNodes	TCNodeSet

typedef TCNodeSet::Tdata	TNodeList

typedef TNodeList::value_type::element_type	TCNode

typedef TCNode::TFeatures	TCNodeFeatureSet

typedef TCNodeFeatureSet::Tdata	TNodeFeatureList

typedef TNodeFeatureList::value_type::element_type	TCNodeFeature

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
virtual bool	CanMerge (IEditCommand *cmd)
	IEditCommand merge commands (macros allow changes to both properties and selection sets, so allow those to merge): More...

virtual void	Merge (IEditCommand *cmd)

	CChangePhyloPropertyCmd (CPhyTreeView view, CFeatureEdit fedit, CRef< CPhyloTreeDataSource > ds, CConstRef< objects::CBioTreeContainer > bio_tree)

void	PerformFeatureDictEdit (CBioTreeFeatureDictionary &dict)

void	PerformEdit (CBioTreeFeatureDictionary &dict, bool prev_features)

virtual void	Execute ()
	Do the editing action. More...

virtual void	Unexecute ()
	Undo (opposite to Execute()) More...

virtual string	GetLabel ()

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from IEditCommand
virtual	~IEditCommand ()

virtual	~IEditCommand ()

virtual void	Do (IScopeTransaction_Impl &)=0

virtual void	Undo ()=0

Private Attributes
CPhyTreeView *	m_View

CConstRef< objects::CBioTreeContainer >	m_BioTree

CRef< CPhyloTreeDataSource >	m_DS

CRef< CFeatureEdit >	m_FeatureEdit

CPhyloTreeLabel	m_Label

CRef< CChangePhyloSelectionSetCmd >	m_MergedCmd

Additional Inherited Members
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 325 of file phy_tree_view.cpp.

Member Typedef Documentation

◆ TCFeatureDescr

typedef TContainerDict::Tdata::value_type::element_type CChangePhyloPropertyCmd::TCFeatureDescr

Definition at line 329 of file phy_tree_view.cpp.

◆ TCNode

typedef TNodeList::value_type::element_type CChangePhyloPropertyCmd::TCNode

Definition at line 333 of file phy_tree_view.cpp.

◆ TCNodeFeature

typedef TNodeFeatureList::value_type::element_type CChangePhyloPropertyCmd::TCNodeFeature

Definition at line 336 of file phy_tree_view.cpp.

◆ TCNodeFeatureSet

typedef TCNode::TFeatures CChangePhyloPropertyCmd::TCNodeFeatureSet

Definition at line 334 of file phy_tree_view.cpp.

◆ TCNodeSet

typedef CBioTreeContainer::TNodes CChangePhyloPropertyCmd::TCNodeSet

Definition at line 331 of file phy_tree_view.cpp.

◆ TContainerDict

typedef CBioTreeContainer::TFdict CChangePhyloPropertyCmd::TContainerDict

Definition at line 328 of file phy_tree_view.cpp.

◆ TNodeFeatureList

typedef TCNodeFeatureSet::Tdata CChangePhyloPropertyCmd::TNodeFeatureList

Definition at line 335 of file phy_tree_view.cpp.

◆ TNodeList

typedef TCNodeSet::Tdata CChangePhyloPropertyCmd::TNodeList

Definition at line 332 of file phy_tree_view.cpp.

Constructor & Destructor Documentation

◆ CChangePhyloPropertyCmd()

CChangePhyloPropertyCmd::CChangePhyloPropertyCmd	(	CPhyTreeView *	view,
		CFeatureEdit *	fedit,
		CRef< CPhyloTreeDataSource >	ds,
		CConstRef< objects::CBioTreeContainer >	bio_tree
	)

inline

Definition at line 358 of file phy_tree_view.cpp.

References CPhyloTreeWidget::GetScheme(), CPhyloTreeDataSource::GetTree(), CFeatureEdit::GetUpdated(), CPhyTreeView::GetWidget(), m_BioTree, m_DS, m_FeatureEdit, m_Label, m_View, CRef< C, Locker >::Reset(), CPhyloTreeLabel::SetScheme(), and ct::sort().

Member Function Documentation

◆ CanMerge()

virtual bool CChangePhyloPropertyCmd::CanMerge ( IEditCommand * cmd )

inlinevirtual

IEditCommand merge commands (macros allow changes to both properties and selection sets, so allow those to merge):

Reimplemented from IEditCommand.

Definition at line 341 of file phy_tree_view.cpp.

References cmd, and NULL.

◆ Execute()

virtual void CChangePhyloPropertyCmd::Execute ( )

inlinevirtual

Do the editing action.

Implements IEditCommand.

Definition at line 466 of file phy_tree_view.cpp.

References CPhyTreeView::AppliedEditToDataSource(), CStopWatch::Elapsed(), CChangePhyloSelectionSetCmd::Execute(), CFeatureEdit::GetDictionary(), CPhyloTree::GetFeatureDict(), CFeatureEdit::GetPrevDictionary(), CPhyloTreeDataSource::GetTree(), CRef< C, Locker >::IsNull(), m_DS, m_ExecutePropertyCommand, m_FeatureEdit, m_MergedCmd, m_View, NULL, PerformEdit(), PerformFeatureDictEdit(), CPhyTreeView::RebuildObjectIndex(), CFeatureEdit::SeqIdEdited(), and CStopWatch::Start().

◆ GetLabel()

virtual string CChangePhyloPropertyCmd::GetLabel ( void )

inlinevirtual

Implements IEditCommand.

Definition at line 511 of file phy_tree_view.cpp.

◆ Merge()

virtual void CChangePhyloPropertyCmd::Merge ( IEditCommand * cmd )

inlinevirtual

Reimplemented from IEditCommand.

Definition at line 350 of file phy_tree_view.cpp.

References cmd, CRef< C, Locker >::IsNull(), m_MergedCmd, NULL, and CRef< C, Locker >::Reset().

◆ PerformEdit()

void CChangePhyloPropertyCmd::PerformEdit	(	CBioTreeFeatureDictionary &	dict,
		bool	prev_features
	)

inline

◆ PerformFeatureDictEdit()

void CChangePhyloPropertyCmd::PerformFeatureDictEdit ( CBioTreeFeatureDictionary & dict )

inline

Definition at line 374 of file phy_tree_view.cpp.

References CBioTreeFeatureDictionary::GetFeatureDict(), CConstRef< C, Locker >::GetPointer(), ITERATE, m_BioTree, CFeatureDictSet_Base::Reset(), CFeatureDictSet_Base::Set(), and CBioTreeContainer_Base::SetFdict().

Referenced by Execute(), and Unexecute().

◆ Unexecute()

virtual void CChangePhyloPropertyCmd::Unexecute ( )

inlinevirtual

Undo (opposite to Execute())

Implements IEditCommand.

Definition at line 492 of file phy_tree_view.cpp.

References CPhyTreeView::AppliedEditToDataSource(), CPhyloTree::GetFeatureDict(), CFeatureEdit::GetPrevDictionary(), CPhyloTreeDataSource::GetTree(), CRef< C, Locker >::IsNull(), m_DS, m_FeatureEdit, m_MergedCmd, m_View, NULL, PerformEdit(), PerformFeatureDictEdit(), CPhyTreeView::RebuildObjectIndex(), CFeatureEdit::SeqIdEdited(), and CChangePhyloSelectionSetCmd::Unexecute().

Member Data Documentation

◆ m_BioTree

CConstRef<objects::CBioTreeContainer> CChangePhyloPropertyCmd::m_BioTree

private

Definition at line 517 of file phy_tree_view.cpp.

Referenced by CChangePhyloPropertyCmd(), PerformEdit(), and PerformFeatureDictEdit().

◆ m_DS

CRef<CPhyloTreeDataSource> CChangePhyloPropertyCmd::m_DS

private

Definition at line 519 of file phy_tree_view.cpp.

Referenced by CChangePhyloPropertyCmd(), Execute(), PerformEdit(), and Unexecute().

◆ m_FeatureEdit

CRef<CFeatureEdit> CChangePhyloPropertyCmd::m_FeatureEdit

private

Definition at line 520 of file phy_tree_view.cpp.

Referenced by CChangePhyloPropertyCmd(), Execute(), PerformEdit(), and Unexecute().

◆ m_Label

CPhyloTreeLabel CChangePhyloPropertyCmd::m_Label

private

Definition at line 521 of file phy_tree_view.cpp.

Referenced by CChangePhyloPropertyCmd(), and PerformEdit().

◆ m_MergedCmd

CRef<CChangePhyloSelectionSetCmd> CChangePhyloPropertyCmd::m_MergedCmd

private

Definition at line 523 of file phy_tree_view.cpp.

Referenced by Execute(), Merge(), and Unexecute().

◆ m_View

CPhyTreeView* CChangePhyloPropertyCmd::m_View

private

Definition at line 514 of file phy_tree_view.cpp.

Referenced by CChangePhyloPropertyCmd(), Execute(), PerformEdit(), and Unexecute().

The documentation for this class was generated from the following file:

src/gui/packages/pkg_alignment/phy_tree_view.cpp

Public Types

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TCFeatureDescr

◆ TCNode

◆ TCNodeFeature

◆ TCNodeFeatureSet

◆ TCNodeSet

◆ TContainerDict

◆ TNodeFeatureList

◆ TNodeList

Constructor & Destructor Documentation

◆ CChangePhyloPropertyCmd()

Member Function Documentation

◆ CanMerge()

◆ Execute()

◆ GetLabel()

◆ Merge()

◆ PerformEdit()

◆ PerformFeatureDictEdit()

◆ Unexecute()

Member Data Documentation

◆ m_BioTree

◆ m_DS

◆ m_FeatureEdit

◆ m_Label

◆ m_MergedCmd

◆ m_View