Search Toolkit Book for CChem_graph_interaction
CChem_graph_interaction –. More...
#include <objects/mmdb3/Chem_graph_interaction.hpp>
Inheritance diagram for CChem_graph_interaction:
Collaboration diagram for CChem_graph_interaction:
Public Member Functions | |
| CChem_graph_interaction (void) | |
| ~CChem_graph_interaction (void) | |
| Public Member Functions inherited from CChem_graph_interaction_Base | |
| CChem_graph_interaction_Base (void) | |
| virtual | ~CChem_graph_interaction_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetType (void) const |
| Check if a value has been assigned to Type data member. More... | |
| bool | CanGetType (void) const |
| Check if it is safe to call GetType method. More... | |
| void | ResetType (void) |
| Reset Type data member. More... | |
| TType | GetType (void) const |
| Get the Type member data. More... | |
| void | SetType (TType value) |
| Assign a value to Type data member. More... | |
| TType & | SetType (void) |
| Assign a value to Type data member. More... | |
| bool | IsSetDistance_threshold (void) const |
| Check if a value has been assigned to Distance_threshold data member. More... | |
| bool | CanGetDistance_threshold (void) const |
| Check if it is safe to call GetDistance_threshold method. More... | |
| void | ResetDistance_threshold (void) |
| Reset Distance_threshold data member. More... | |
| const TDistance_threshold & | GetDistance_threshold (void) const |
| Get the Distance_threshold member data. More... | |
| void | SetDistance_threshold (TDistance_threshold &value) |
| Assign a value to Distance_threshold data member. More... | |
| TDistance_threshold & | SetDistance_threshold (void) |
| Assign a value to Distance_threshold data member. More... | |
| bool | IsSetInteractors (void) const |
| Check if a value has been assigned to Interactors data member. More... | |
| bool | CanGetInteractors (void) const |
| Check if it is safe to call GetInteractors method. More... | |
| void | ResetInteractors (void) |
| Reset Interactors data member. More... | |
| const TInteractors & | GetInteractors (void) const |
| Get the Interactors member data. More... | |
| TInteractors & | SetInteractors (void) |
| Assign a value to Interactors data member. More... | |
| bool | IsSetResidue_contacts (void) const |
| Check if a value has been assigned to Residue_contacts data member. More... | |
| bool | CanGetResidue_contacts (void) const |
| Check if it is safe to call GetResidue_contacts method. More... | |
| void | ResetResidue_contacts (void) |
| Reset Residue_contacts data member. More... | |
| const TResidue_contacts & | GetResidue_contacts (void) const |
| Get the Residue_contacts member data. More... | |
| TResidue_contacts & | SetResidue_contacts (void) |
| Assign a value to Residue_contacts data member. More... | |
| bool | IsSetAtom_contacts (void) const |
| Check if a value has been assigned to Atom_contacts data member. More... | |
| bool | CanGetAtom_contacts (void) const |
| Check if it is safe to call GetAtom_contacts method. More... | |
| void | ResetAtom_contacts (void) |
| Reset Atom_contacts data member. More... | |
| const TAtom_contacts & | GetAtom_contacts (void) const |
| Get the Atom_contacts member data. More... | |
| TAtom_contacts & | SetAtom_contacts (void) |
| Assign a value to Atom_contacts data member. More... | |
| bool | IsSetAtom_distance (void) const |
| Check if a value has been assigned to Atom_distance data member. More... | |
| bool | CanGetAtom_distance (void) const |
| Check if it is safe to call GetAtom_distance method. More... | |
| void | ResetAtom_distance (void) |
| Reset Atom_distance data member. More... | |
| const TAtom_distance & | GetAtom_distance (void) const |
| Get the Atom_distance member data. More... | |
| TAtom_distance & | SetAtom_distance (void) |
| Assign a value to Atom_distance data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CChem_graph_interaction_Base | Tparent |
Private Member Functions | |
| CChem_graph_interaction (const CChem_graph_interaction &value) | |
| CChem_graph_interaction & | operator= (const CChem_graph_interaction &value) |
Additional Inherited Members | |
| Public Types inherited from CChem_graph_interaction_Base | |
| enum | EType { eType_protein_protein = 1 , eType_protein_dna = 2 , eType_protein_rna = 3 , eType_protein_chemical = 4 , eType_dna_dna = 5 , eType_dna_rna = 6 , eType_dna_chemical = 7 , eType_rna_rna = 8 , eType_rna_chemical = 9 , eType_other = 255 } |
| enum class | E_memberIndex { e__allMandatory = 0 , e_type , e_distance_threshold , e_interactors , e_residue_contacts , e_atom_contacts , e_atom_distance } |
| typedef int | TType |
| typedef CRealValue | TDistance_threshold |
| typedef list< CRef< CBiostruc_molecule_pntr > > | TInteractors |
| typedef list< CRef< CChem_graph_pntrs > > | TResidue_contacts |
| typedef list< CRef< CChem_graph_pntrs > > | TAtom_contacts |
| typedef list< CRef< CRealValue > > | TAtom_distance |
| typedef Tparent::CMemberIndex< E_memberIndex, 7 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CChem_graph_interaction_Base | |
| static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | EType (void) |
| Access to EType's attributes (values, names) as defined in spec. More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 65 of file Chem_graph_interaction.hpp.
The documentation for this class was generated from the following files:
- include/objects/mmdb3/Chem_graph_interaction.hpp
- src/objects/mmdb3/Chem_graph_interaction.cpp
