Search Toolkit Book for CClone_seq_Base

#include <objects/seqfeat/Clone_seq_.hpp>

Inheritance diagram for CClone_seq_Base:

Collaboration diagram for CClone_seq_Base:

Public Types
enum	EType { eType_insert = 0 , eType_end = 1 , eType_other = 255 }

enum	EConfidence { eConfidence_multiple = 0 , eConfidence_na = 1 , eConfidence_nohit_rep = 2 , eConfidence_nohitnorep = 3 , eConfidence_other_chrm = 4 , eConfidence_unique = 5 , eConfidence_virtual = 6 , eConfidence_multiple_rep = 7 , eConfidence_multiplenorep = 8 , eConfidence_no_hit = 9 , eConfidence_other = 255 }

enum	ESupport { eSupport_prototype = 0 , eSupport_supporting = 1 , eSupport_supports_other = 2 , eSupport_non_supporting = 3 }

enum class	E_memberIndex { e__allMandatory = 0 , e_type , e_confidence , e_location , e_seq , e_align_id , e_support }

typedef int	TType

typedef int	TConfidence

typedef CSeq_loc	TLocation

typedef CSeq_loc	TSeq

typedef CDbtag	TAlign_id

typedef int	TSupport

typedef Tparent::CMemberIndex< E_memberIndex, 7 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CClone_seq_Base (void)

virtual	~CClone_seq_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetType (void) const
	Check if a value has been assigned to Type data member. More...

bool	CanGetType (void) const
	Check if it is safe to call GetType method. More...

void	ResetType (void)
	Reset Type data member. More...

TType	GetType (void) const
	Get the Type member data. More...

void	SetType (TType value)
	Assign a value to Type data member. More...

TType &	SetType (void)
	Assign a value to Type data member. More...

bool	IsSetConfidence (void) const
	Check if a value has been assigned to Confidence data member. More...

bool	CanGetConfidence (void) const
	Check if it is safe to call GetConfidence method. More...

void	ResetConfidence (void)
	Reset Confidence data member. More...

TConfidence	GetConfidence (void) const
	Get the Confidence member data. More...

void	SetConfidence (TConfidence value)
	Assign a value to Confidence data member. More...

TConfidence &	SetConfidence (void)
	Assign a value to Confidence data member. More...

bool	IsSetLocation (void) const
	location on sequence Check if a value has been assigned to Location data member. More...

bool	CanGetLocation (void) const
	Check if it is safe to call GetLocation method. More...

void	ResetLocation (void)
	Reset Location data member. More...

const TLocation &	GetLocation (void) const
	Get the Location member data. More...

void	SetLocation (TLocation &value)
	Assign a value to Location data member. More...

TLocation &	SetLocation (void)
	Assign a value to Location data member. More...

bool	IsSetSeq (void) const
	clone sequence location Check if a value has been assigned to Seq data member. More...

bool	CanGetSeq (void) const
	Check if it is safe to call GetSeq method. More...

void	ResetSeq (void)
	Reset Seq data member. More...

const TSeq &	GetSeq (void) const
	Get the Seq member data. More...

void	SetSeq (TSeq &value)
	Assign a value to Seq data member. More...

TSeq &	SetSeq (void)
	Assign a value to Seq data member. More...

bool	IsSetAlign_id (void) const
	internal alignment identifier Check if a value has been assigned to Align_id data member. More...

bool	CanGetAlign_id (void) const
	Check if it is safe to call GetAlign_id method. More...

void	ResetAlign_id (void)
	Reset Align_id data member. More...

const TAlign_id &	GetAlign_id (void) const
	Get the Align_id member data. More...

void	SetAlign_id (TAlign_id &value)
	Assign a value to Align_id data member. More...

TAlign_id &	SetAlign_id (void)
	Assign a value to Align_id data member. More...

bool	IsSetSupport (void) const
	Check if a value has been assigned to Support data member. More...

bool	CanGetSupport (void) const
	Check if it is safe to call GetSupport method. More...

void	ResetSupport (void)
	Reset Support data member. More...

TSupport	GetSupport (void) const
	Get the Support member data. More...

void	SetSupport (TSupport value)
	Assign a value to Support data member. More...

TSupport &	SetSupport (void)
	Assign a value to Support data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EType (void)
	Access to EType's attributes (values, names) as defined in spec. More...

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EConfidence (void)
	Access to EConfidence's attributes (values, names) as defined in spec. More...

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ESupport (void)
	Access to ESupport's attributes (values, names) as defined in spec. More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CSerialObject	Tparent

Private Member Functions
	CClone_seq_Base (const CClone_seq_Base &)

CClone_seq_Base &	operator= (const CClone_seq_Base &)

Private Attributes
Uint4	m_set_State [1]

int	m_Type

int	m_Confidence

CRef< TLocation >	m_Location

CRef< TSeq >	m_Seq

CRef< TAlign_id >	m_Align_id

int	m_Support

Additional Inherited Members
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

CClone_seq_Base –.

Definition at line 73 of file Clone_seq_.hpp.

The documentation for this class was generated from the following files:

include/objects/seqfeat/Clone_seq_.hpp
src/objects/seqfeat/Clone_seq_.cpp

Public Types

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description