NCBI C++ ToolKit
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CCmdChangeBioseqId Class Reference

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#include <gui/objutils/cmd_change_bioseq_id.hpp>

+ Inheritance diagram for CCmdChangeBioseqId:
+ Collaboration diagram for CCmdChangeBioseqId:

Public Member Functions

 CCmdChangeBioseqId (const objects::CBioseq_Handle &bh, const objects::CSeq_id &old_id, const objects::CSeq_id &new_id)
 
IEditCommand interface implementation
virtual void Execute ()
 Do the editing action. More...
 
virtual void Unexecute ()
 Undo (opposite to Execute()) More...
 
virtual string GetLabel ()
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from IEditCommand
virtual ~IEditCommand ()
 
virtual bool CanMerge (IEditCommand *)
 
virtual void Merge (IEditCommand *)
 
virtual ~IEditCommand ()
 
virtual void Do (IScopeTransaction_Impl &)=0
 
virtual void Undo ()=0
 

Protected Attributes

objects::CBioseq_Handle m_BH
 
objects::CSeq_id_Handle m_old_idh
 
objects::CSeq_id_Handle m_new_idh
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 44 of file cmd_change_bioseq_id.hpp.

Constructor & Destructor Documentation

◆ CCmdChangeBioseqId()

CCmdChangeBioseqId::CCmdChangeBioseqId ( const objects::CBioseq_Handle &  bh,
const objects::CSeq_id &  old_id,
const objects::CSeq_id &  new_id 
)

Definition at line 36 of file cmd_change_bioseq_id.cpp.

References CSeq_id_Handle::GetHandle(), m_new_idh, and m_old_idh.

Member Function Documentation

◆ Execute()

void CCmdChangeBioseqId::Execute ( )
virtual

Do the editing action.

Implements IEditCommand.

Definition at line 43 of file cmd_change_bioseq_id.cpp.

References CBioseq_EditHandle::AddId(), m_BH, m_new_idh, m_old_idh, CBioseq_EditHandle::RemoveId(), and swap().

Referenced by Unexecute().

◆ GetLabel()

string CCmdChangeBioseqId::GetLabel ( void  )
virtual

Implements IEditCommand.

Definition at line 56 of file cmd_change_bioseq_id.cpp.

◆ Unexecute()

void CCmdChangeBioseqId::Unexecute ( )
virtual

Undo (opposite to Execute())

Implements IEditCommand.

Definition at line 51 of file cmd_change_bioseq_id.cpp.

References Execute().

Member Data Documentation

◆ m_BH

objects::CBioseq_Handle CCmdChangeBioseqId::m_BH
protected

Definition at line 58 of file cmd_change_bioseq_id.hpp.

Referenced by Execute().

◆ m_new_idh

objects::CSeq_id_Handle CCmdChangeBioseqId::m_new_idh
protected

Definition at line 60 of file cmd_change_bioseq_id.hpp.

Referenced by CCmdChangeBioseqId(), and Execute().

◆ m_old_idh

objects::CSeq_id_Handle CCmdChangeBioseqId::m_old_idh
protected

Definition at line 59 of file cmd_change_bioseq_id.hpp.

Referenced by CCmdChangeBioseqId(), and Execute().


The documentation for this class was generated from the following files:
Modified on Fri Sep 20 14:57:23 2024 by modify_doxy.py rev. 669887