CComment_rule Class Reference

Represents ASN.1 type Comment-rule defined in file valid.asn

Search Toolkit Book for CComment_rule

#include <objects/valid/Comment_rule.hpp>

Inheritance diagram for CComment_rule:

Collaboration diagram for CComment_rule:

Public Types
typedef pair< CField_rule::TSeverity, string >	TError
typedef vector< TError >	TErrorList
Public Types inherited from CComment_rule_Base
enum class	E_memberIndex {   e__allMandatory = 0 , e_prefix , e_updated , e_fields ,   e_require_order , e_allow_unlisted , e_dependent_rules , e_forbidden_phrases }
typedef string	TPrefix
typedef bool	TUpdated
typedef CField_set	TFields
typedef bool	TRequire_order
typedef bool	TAllow_unlisted
typedef CDependent_field_set	TDependent_rules
typedef CPhrase_list	TForbidden_phrases
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CComment_rule (void)
	~CComment_rule (void)
CConstRef< CField_rule >	FindFieldRuleRef (const string &field_name) const
TErrorList	IsValid (const CUser_object &user) const
void	CheckFieldValue (CConstRef< CField_rule > field_rule, const string &value, TErrorList &errors) const
void	CheckFieldValue (CConstRef< CField_rule > rule, const CUser_field &field, TErrorList &errors) const
bool	ReorderFields (CUser_object &user) const
Public Member Functions inherited from CComment_rule_Base
	CComment_rule_Base (void)
virtual	~CComment_rule_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetPrefix (void) const
	Check if a value has been assigned to Prefix data member. More...
bool	CanGetPrefix (void) const
	Check if it is safe to call GetPrefix method. More...
void	ResetPrefix (void)
	Reset Prefix data member. More...
const TPrefix &	GetPrefix (void) const
	Get the Prefix member data. More...
void	SetPrefix (const TPrefix &value)
	Assign a value to Prefix data member. More...
void	SetPrefix (TPrefix &&value)
TPrefix &	SetPrefix (void)
	Assign a value to Prefix data member. More...
bool	IsSetUpdated (void) const
	Check if a value has been assigned to Updated data member. More...
bool	CanGetUpdated (void) const
	Check if it is safe to call GetUpdated method. More...
void	ResetUpdated (void)
	Reset Updated data member. More...
void	SetDefaultUpdated (void)
	Assign default value to Updated data member. More...
TUpdated	GetUpdated (void) const
	Get the Updated member data. More...
void	SetUpdated (TUpdated value)
	Assign a value to Updated data member. More...
TUpdated &	SetUpdated (void)
	Assign a value to Updated data member. More...
bool	IsSetFields (void) const
	Check if a value has been assigned to Fields data member. More...
bool	CanGetFields (void) const
	Check if it is safe to call GetFields method. More...
void	ResetFields (void)
	Reset Fields data member. More...
const TFields &	GetFields (void) const
	Get the Fields member data. More...
void	SetFields (TFields &value)
	Assign a value to Fields data member. More...
TFields &	SetFields (void)
	Assign a value to Fields data member. More...
bool	IsSetRequire_order (void) const
	Check if a value has been assigned to Require_order data member. More...
bool	CanGetRequire_order (void) const
	Check if it is safe to call GetRequire_order method. More...
void	ResetRequire_order (void)
	Reset Require_order data member. More...
void	SetDefaultRequire_order (void)
	Assign default value to Require_order data member. More...
TRequire_order	GetRequire_order (void) const
	Get the Require_order member data. More...
void	SetRequire_order (TRequire_order value)
	Assign a value to Require_order data member. More...
TRequire_order &	SetRequire_order (void)
	Assign a value to Require_order data member. More...
bool	IsSetAllow_unlisted (void) const
	Check if a value has been assigned to Allow_unlisted data member. More...
bool	CanGetAllow_unlisted (void) const
	Check if it is safe to call GetAllow_unlisted method. More...
void	ResetAllow_unlisted (void)
	Reset Allow_unlisted data member. More...
void	SetDefaultAllow_unlisted (void)
	Assign default value to Allow_unlisted data member. More...
TAllow_unlisted	GetAllow_unlisted (void) const
	Get the Allow_unlisted member data. More...
void	SetAllow_unlisted (TAllow_unlisted value)
	Assign a value to Allow_unlisted data member. More...
TAllow_unlisted &	SetAllow_unlisted (void)
	Assign a value to Allow_unlisted data member. More...
bool	IsSetDependent_rules (void) const
	Check if a value has been assigned to Dependent_rules data member. More...
bool	CanGetDependent_rules (void) const
	Check if it is safe to call GetDependent_rules method. More...
void	ResetDependent_rules (void)
	Reset Dependent_rules data member. More...
const TDependent_rules &	GetDependent_rules (void) const
	Get the Dependent_rules member data. More...
void	SetDependent_rules (TDependent_rules &value)
	Assign a value to Dependent_rules data member. More...
TDependent_rules &	SetDependent_rules (void)
	Assign a value to Dependent_rules data member. More...
bool	IsSetForbidden_phrases (void) const
	Check if a value has been assigned to Forbidden_phrases data member. More...
bool	CanGetForbidden_phrases (void) const
	Check if it is safe to call GetForbidden_phrases method. More...
void	ResetForbidden_phrases (void)
	Reset Forbidden_phrases data member. More...
const TForbidden_phrases &	GetForbidden_phrases (void) const
	Get the Forbidden_phrases member data. More...
void	SetForbidden_phrases (TForbidden_phrases &value)
	Assign a value to Forbidden_phrases data member. More...
TForbidden_phrases &	SetForbidden_phrases (void)
	Assign a value to Forbidden_phrases data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Static Public Member Functions
static void	NormalizePrefix (string &prefix)
static bool	IsStructuredComment (const CUser_object &user)
static string	GetStructuredCommentPrefix (const CUser_object &user, bool normalize=true)
static string	MakePrefixFromRoot (const string &root)
static string	MakeSuffixFromRoot (const string &root)
static string	KeywordForPrefix (const string &prefix)
static string	PrefixForKeyword (const string &keyword)
static vector< string >	GetKeywordList ()
static void	CheckGeneralFieldValue (const string &value, TErrorList &errors)
static void	CheckGeneralFieldName (const string &label, TErrorList &errors)
static void	CheckGeneralField (const CUser_field &field, TErrorList &errors)
static TErrorList	CheckGeneralStructuredComment (const CUser_object &user)
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CComment_rule_Base	Tparent

Private Member Functions
	CComment_rule (const CComment_rule &value)
CComment_rule &	operator= (const CComment_rule &value)

Additional Inherited Members
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 55 of file Comment_rule.hpp.

Member Typedef Documentation

TError

typedef pair<CField_rule::TSeverity, string> CComment_rule::TError

Definition at line 75 of file Comment_rule.hpp.

TErrorList

typedef vector<TError> CComment_rule::TErrorList

Definition at line 76 of file Comment_rule.hpp.

Tparent

typedef CComment_rule_Base CComment_rule::Tparent

private

Definition at line 57 of file Comment_rule.hpp.

Constructor & Destructor Documentation

CComment_rule() [1/2]

CComment_rule::CComment_rule ( void  )

inline

Definition at line 97 of file Comment_rule.hpp.

~CComment_rule()

CComment_rule::~CComment_rule

(

void

)

Definition at line 59 of file Comment_rule.cpp.

CComment_rule() [2/2]

CComment_rule::CComment_rule ( const CComment_rule &  value )

private

Member Function Documentation

CheckFieldValue() [1/2]

void CComment_rule::CheckFieldValue	(	CConstRef< CField_rule >	field_rule,
		const string &	value,
		TErrorList &	errors
	)		const

Definition at line 247 of file Comment_rule.cpp.

References CheckGeneralFieldValue(), NStr::EqualNocase(), eSeverity_level_error, NStr::FindNoCase(), Get(), CComment_rule_Base::GetForbidden_phrases(), CComment_rule_Base::GetPrefix(), CComment_rule_Base::IsSetForbidden_phrases(), ITERATE, and rapidjson::value.

Referenced by CheckFieldValue(), and IsValid().

CheckFieldValue() [2/2]

void CComment_rule::CheckFieldValue	(	CConstRef< CField_rule >	rule,
		const CUser_field &	field,
		TErrorList &	errors
	)		const

Definition at line 274 of file Comment_rule.cpp.

References CheckFieldValue(), CUser_field_Base::GetData(), CUser_field_Base::C_Data::GetInt(), CUser_field_Base::C_Data::GetStr(), NStr::IntToString(), CUser_field_Base::C_Data::IsInt(), CUser_field_Base::C_Data::IsStr(), and rapidjson::value.

CheckGeneralField()

void CComment_rule::CheckGeneralField ( const CUser_field &  field, TErrorList &  errors  )

static

Definition at line 224 of file Comment_rule.cpp.

References CheckGeneralFieldName(), CheckGeneralFieldValue(), CUser_field_Base::GetData(), CObject_id_Base::GetId(), CUser_field_Base::C_Data::GetInt(), CUser_field_Base::GetLabel(), CObject_id_Base::GetStr(), CUser_field_Base::C_Data::GetStr(), NStr::IntToString(), CUser_field_Base::C_Data::IsInt(), CUser_field_Base::IsSetLabel(), CObject_id_Base::IsStr(), CUser_field_Base::C_Data::IsStr(), label, and rapidjson::value.

Referenced by CheckGeneralStructuredComment(), and IsValid().

CheckGeneralFieldName()

void CComment_rule::CheckGeneralFieldName ( const string &  label, TErrorList &  errors  )

static

Definition at line 203 of file Comment_rule.cpp.

References eSeverity_level_error, eSeverity_level_reject, NStr::Find(), NStr::IsBlank(), and label.

Referenced by CheckGeneralField().

CheckGeneralFieldValue()

void CComment_rule::CheckGeneralFieldValue ( const string &  value, TErrorList &  errors  )

static

Definition at line 216 of file Comment_rule.cpp.

References eSeverity_level_reject, NStr::Find(), and rapidjson::value.

Referenced by CheckFieldValue(), and CheckGeneralField().

CheckGeneralStructuredComment()

CComment_rule::TErrorList CComment_rule::CheckGeneralStructuredComment ( const CUser_object &  user )

static

Definition at line 543 of file Comment_rule.cpp.

References CheckGeneralField(), CUser_object_Base::GetData(), CUser_object_Base::IsSetData(), and ITERATE.

Referenced by CValidError_desc::ValidateStructuredCommentGeneric().

FindFieldRuleRef()

CConstRef< CField_rule > CComment_rule::FindFieldRuleRef

(

const string &

field_name

)

const

Definition at line 191 of file Comment_rule.cpp.

References NStr::Equal(), Get(), CComment_rule_Base::GetFields(), and ITERATE.

Referenced by IsAppropriateRule(), and IsValid().

GetKeywordList()

vector< string > CComment_rule::GetKeywordList ( )

static

Definition at line 178 of file Comment_rule.cpp.

References first(), i, k_NumStructuredCommentKeywords, and s_StructuredCommentKeywords.

Referenced by BOOST_AUTO_TEST_CASE(), and CNewCleanup_imp::x_FixStructuredCommentKeywords().

GetStructuredCommentPrefix()

string CComment_rule::GetStructuredCommentPrefix ( const CUser_object &  user, bool  normalize = true  )

static

Definition at line 98 of file Comment_rule.cpp.

References NStr::Equal(), CUser_object_Base::GetData(), CUser_object_Base::IsSetData(), IsStructuredComment(), ITERATE, kStructuredCommentPrefix, kStructuredCommentSuffix, NormalizePrefix(), and prefix.

Referenced by CValidError_bioseq::CheckForMultipleStructuredComments(), GetBioseqDiffs(), CApplyStructCommentTreeItemData::GetFunction(), CComment_set::GetKeywords(), CApplyStructCommentTreeItemData::GetMacroDescription(), CStructCommDBName::GetVals(), CStructuredCommentField::IsStructuredCommentForThisField(), CStructuredCommentField::IsValid(), CStructuredCommentField::ReorderFields(), s_GetKeywordForStructuredComment(), s_IsReportableStructuredComment(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CKeywordsItem::x_GatherInfo(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CValidError_desc::x_ValidateStructuredComment(), and CValidError_desc::x_ValidateStructuredCommentPrefix().

IsStructuredComment()

bool CComment_rule::IsStructuredComment ( const CUser_object &  user )

static

Definition at line 86 of file Comment_rule.cpp.

References NStr::EqualNocase(), CObject_id_Base::GetStr(), CUser_object_Base::GetType(), CUser_object_Base::IsSetType(), CObject_id_Base::IsStr(), and kStructuredComment.

Referenced by CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CValidError_bioseq::CheckForMultipleStructuredComments(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructCommFieldValuePair::GetApplyObjects(), CStructCommentFieldPanel::GetStructCommentFields(), GetStructuredCommentPrefix(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructCommFieldValuePair::IsEmpty(), CStructuredCommentField::IsStructuredCommentForThisField(), CMacroFunction_ParseToStructComm::TheFunction(), CMacroFunction_SetStructCommDb::TheFunction(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CKeywordsItem::x_GatherInfo(), and CMacroBioData_StructCommentIter::x_StepToNextStructComment().

IsValid()

CComment_rule::TErrorList CComment_rule::IsValid

(

const CUser_object &

user

)

const

Definition at line 286 of file Comment_rule.cpp.

References CheckFieldValue(), CheckGeneralField(), NStr::Equal(), eSeverity_level_error, FindFieldRuleRef(), Get(), CField_set_Base::Get(), CComment_rule_Base::GetAllow_unlisted(), CUser_field_Base::GetData(), CUser_object_Base::GetData(), CComment_rule_Base::GetDependent_rules(), CUser_object::GetFieldRef(), CComment_rule_Base::GetFields(), CUser_field_Base::C_Data::GetInt(), CConstRef< C, Locker >::GetPointer(), CComment_rule_Base::GetRequire_order(), CUser_field_Base::C_Data::GetStr(), NStr::IntToString(), NStr::IsBlank(), CUser_field_Base::C_Data::IsInt(), CComment_rule_Base::IsSetDependent_rules(), CUser_field_Base::C_Data::IsStr(), ITERATE, kEmptyStr, label, and rapidjson::value.

Referenced by FindAppropriateRule(), CComment_set::GetKeywords(), CStructuredCommentField::IsValid(), CValidError_desc::ValidateStructuredComment(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), and CKeywordsItem::x_GatherInfo().

KeywordForPrefix()

string CComment_rule::KeywordForPrefix ( const string &  prefix )

static

Definition at line 150 of file Comment_rule.cpp.

References NStr::Equal(), SStaticPair< FirstType, SecondType >::first, i, k_NumStructuredCommentKeywords, NormalizePrefix(), prefix, s_StructuredCommentKeywords, and SStaticPair< FirstType, SecondType >::second.

Referenced by BOOST_AUTO_TEST_CASE(), CComment_set::GetKeywords(), s_GetKeywordForStructuredComment(), and CNewCleanup_imp::x_FixStructuredCommentKeywords().

MakePrefixFromRoot()

string CComment_rule::MakePrefixFromRoot ( const string &  root )

static

Definition at line 120 of file Comment_rule.cpp.

References NormalizePrefix(), and prefix.

Referenced by CComment_set::GetFieldNames(), CComment_set::GetKeywords(), CStructuredCommentField::MakeUserObject(), CCleanup::s_CleanupStructuredComment(), CApplyStructCommentTreeItemData::SetData(), CEditingActionDescStructCommDbName::SetValue(), CMacroFunction_ParseToStructComm::TheFunction(), and CMacroFunction_SetStructCommDb::x_MakeNewStructuredComment().

MakeSuffixFromRoot()

string CComment_rule::MakeSuffixFromRoot ( const string &  root )

static

Definition at line 129 of file Comment_rule.cpp.

References NormalizePrefix(), and suffix.

Referenced by CStructuredCommentField::MakeUserObject(), CCleanup::s_CleanupStructuredComment(), CApplyStructCommentTreeItemData::SetData(), CEditingActionDescStructCommDbName::SetValue(), CMacroFunction_ParseToStructComm::TheFunction(), and CMacroFunction_SetStructCommDb::x_MakeNewStructuredComment().

NormalizePrefix()

void CComment_rule::NormalizePrefix ( string &  prefix )

static

Definition at line 64 of file Comment_rule.cpp.

References NStr::EndsWith(), NStr::eNocase, NStr::IsBlank(), prefix, and NStr::StartsWith().

Referenced by CStructuredCommentField::CStructuredCommentField(), CComment_set::FindCommentRuleEx(), GetStructuredCommentPrefix(), CEditingActionDescStructCommDbName::GetValue(), CStructuredCommentField::IsStructuredCommentForThisField(), KeywordForPrefix(), MakePrefixFromRoot(), MakeSuffixFromRoot(), CStructuredCommentField::MakeUserObject(), CCleanup::s_CleanupStructuredComment(), CApplyStructCommentTreeItemData::SetData(), and CValidError_desc::x_ValidateStructuredCommentSuffix().

operator=()

CComment_rule& CComment_rule::operator= ( const CComment_rule &  value )

private

PrefixForKeyword()

string CComment_rule::PrefixForKeyword ( const string &  keyword )

static

Definition at line 165 of file Comment_rule.cpp.

References NStr::Equal(), SStaticPair< FirstType, SecondType >::first, i, k_NumStructuredCommentKeywords, s_StructuredCommentKeywords, and SStaticPair< FirstType, SecondType >::second.

Referenced by BOOST_AUTO_TEST_CASE().

ReorderFields()

bool CComment_rule::ReorderFields

(

CUser_object &

user

)

const

Definition at line 468 of file Comment_rule.cpp.

References CSerialObject::Assign(), NStr::Equal(), Get(), CField_set_Base::Get(), CComment_rule_Base::GetFields(), CUser_object_Base::IsSetData(), CComment_rule_Base::IsSetFields(), kStructuredCommentPrefix, kStructuredCommentSuffix, label, and CUser_object_Base::SetData().

Referenced by BOOST_AUTO_TEST_CASE(), CStructuredCommentField::ReorderFields(), and CCleanup::s_CleanupStructuredComment().

---

The documentation for this class was generated from the following files:

• include/objects/valid/Comment_rule.hpp
• src/objects/valid/Comment_rule.cpp