NCBI C++ ToolKit
CCompareSeqRegions Member List

This is the complete list of members for CCompareSeqRegions, including all inherited members.

AddReference(void) constCObjectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CCompareSeqRegions(const CSeq_loc &query_loc, CScope *q_scope, CScope *t_scope, ILocMapper &mapper, const SAnnotSelector &q_sel, const SAnnotSelector &t_sel, const CSeq_id &target_id, TComparisonOptions options=fSelectBest|fMergeExons, EScoreMethod score_method=eScore_SymmetricPctOverlap)CCompareSeqRegionsinline
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CObject(void)CObject
CObject(const CObject &src)CObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
EComparisonOptions enum nameCCompareSeqRegions
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
eScore_Feat1PctOverlap enum valueCCompareSeqRegions
eScore_Feat2PctOverlap enum valueCCompareSeqRegions
eScore_SymmetricPctOverlap enum valueCCompareSeqRegions
EScoreMethod enum nameCCompareSeqRegions
fCreateSentinelGenes enum valueCCompareSeqRegions
fDifferentGenesOnly enum valueCCompareSeqRegions
fMergeExons enum valueCCompareSeqRegions
fSameTypeOnly enum valueCCompareSeqRegions
fSelectBest enum valueCCompareSeqRegions
GetAllocFillMode(void)CObjectstatic
GetOptions() constCCompareSeqRegionsinline
GetQueryLoc() constCCompareSeqRegionsinline
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
m_already_processed_unmatched_targetsCCompareSeqRegionsprivate
m_comp_optionsCCompareSeqRegionsprivate
m_CounterCObjectmutableprivate
m_loc_qCCompareSeqRegionsprivate
m_loc_q_ciCCompareSeqRegionsprivate
m_mapperCCompareSeqRegionsprivate
m_scope_qCCompareSeqRegionsprivate
m_scope_tCCompareSeqRegionsprivate
m_score_methodCCompareSeqRegionsprivate
m_seen_targetsCCompareSeqRegionsprivate
m_selector_qCCompareSeqRegionsprivate
m_selector_tCCompareSeqRegionsprivate
m_self_mapper_qCCompareSeqRegionsprivate
m_self_mapper_tCCompareSeqRegionsprivate
m_target_idCCompareSeqRegionsprivate
NextComparisonGroup(vector< CRef< CCompareFeats > > &v)CCompareSeqRegions
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Rewind()CCompareSeqRegionsinline
s_GetGeneId(const CSeq_feat &feat)CCompareSeqRegionsstatic
SelectMatches(vector< CRef< CCompareFeats > > &v)CCompareSeqRegions
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetOptions()CCompareSeqRegionsinline
sm_DumpEnabledCDebugDumpableprivatestatic
TComparisonOptions typedefCCompareSeqRegions
TCount typedefCObject
TCounter typedefCObject
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TLockerType typedefCObject
x_GetPutativeMatches(vector< CRef< CCompareFeats > > &v, CConstRef< CSeq_feat > q_feat)CCompareSeqRegionsprivate
x_GetSelfLoc(const CSeq_loc &loc, CScope *scope, bool merge_single_range)CCompareSeqRegionsprivate
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
Modified on Wed Feb 21 09:56:32 2024 by modify_doxy.py rev. 669887