NCBI C++ ToolKit
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Search Toolkit Book for CCrossAlnRenderer
#include "cross_aln_render.hpp"
(Private to src/gui/widgets/aln_crossaln
.)
Public Member Functions | |
CCrossAlnRenderer () | |
~CCrossAlnRenderer () | |
void | SetDataSource (const TVPRect &rc, ICrossAlnDataSource *ds) |
void | Update () |
float | GetZoomX_Q (void) const |
void | SetZoomX_Q (float value) |
float | GetZoomX_S (void) const |
void | SetZoomX_S (float value) |
void | SetScaleRef_Q (TModelUnit m_x, TModelUnit m_y, const TModelPoint &point) |
void | SetScaleRef_S (TModelUnit m_x, TModelUnit m_y, const TModelPoint &point) |
void | SetScaleRef_C (TModelUnit m_x, TModelUnit m_y, const TModelPoint &point) |
void | ColorBySegments () |
void | ColorByScore (CConstRef< CObject_id > score_id) |
CConstRef< CObject_id > | GetScoreId () const |
void | ZoomOnRange_Q (TModelUnit from, TModelUnit to) |
void | ZoomOnRange_S (TModelUnit from, TModelUnit to) |
void | SquareOnRect (TModelRect rc) |
void | ResetObjectSelection () |
void | GetObjectSelection (TConstObjects &objs) const |
void | SetObjectSelection (const vector< const CSeq_align * > sel_aligns) |
void | ZoomIn_Q () |
void | ZoomOut_Q () |
void | ZoomAll_Q () |
void | ZoomToSeq_Q () |
void | ZoomIn_S () |
void | ZoomOut_S () |
void | ZoomAll_S () |
void | ZoomToSeq_S () |
CGlPane & | GetRP_Q () |
CGlPane & | GetCP () |
const CGlPane & | GetCP () const |
CGlPane & | GetRP_S () |
void | SetViewport (const TVPRect &rc) |
void | Render () |
TModelRect | HitTest (int x, int y) |
TModelRect | SelectHitTest (int x, int y) |
void | GetTooltip (int x, int y, string *title) |
void | Scroll (TModelUnit dxQ, TModelUnit dxS) |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Private Member Functions | |
void | x_SetupViewPorts (const TVPRect &rc) |
void | x_SetupModelLimits () |
void | x_AdjustCrossPane () |
Additional Inherited Members | |
Public Types inherited from CObject | |
enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
Control filling of newly allocated memory. More... | |
typedef CObjectCounterLocker | TLockerType |
Default locker type for CRef. More... | |
typedef atomic< Uint8 > | TCounter |
Counter type is CAtomiCounter. More... | |
typedef Uint8 | TCount |
Alias for value type of counter. More... | |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
Definition at line 56 of file cross_aln_render.hpp.
CCrossAlnRenderer::CCrossAlnRenderer | ( | ) |
Definition at line 44 of file cross_aln_render.cpp.
References CRuler::eBackground, CGlPane::EnableOffset(), CGlPane::EnableZoom(), CRuler::eTop, kMaxPixelsBase, log, m_CP, m_DS, m_MinZoomX, m_RP_Q, m_RP_S, m_RulerPanel_Q, m_RulerPanel_S, NULL, CGlPane::SetAdjustToLimits(), CRuler::SetColor(), CRuler::SetHorizontal(), and CGlPane::SetMinScaleX().
CCrossAlnRenderer::~CCrossAlnRenderer | ( | ) |
Definition at line 68 of file cross_aln_render.cpp.
void CCrossAlnRenderer::ColorByScore | ( | CConstRef< CObject_id > | score_id | ) |
Definition at line 203 of file cross_aln_render.cpp.
References CCrossPanelIR::ColorByScore(), and m_CrossPanel.
Referenced by CCrossAlnPane::ColorByScore().
void CCrossAlnRenderer::ColorBySegments | ( | ) |
Definition at line 197 of file cross_aln_render.cpp.
References CCrossPanelIR::ColorBySegments(), and m_CrossPanel.
Referenced by CCrossAlnPane::ColorBySegments().
CGlPane & CCrossAlnRenderer::GetCP | ( | ) |
Definition at line 466 of file cross_aln_render.cpp.
References m_CP.
Referenced by CCrossAlnPane::MZHH_Scroll(), CCrossAlnPane::MZHH_SetScale(), CCrossAlnPane::MZHH_ZoomRect(), CCrossAlnPane::x_IsQueryHalf(), and CCrossAlnPane::x_Render().
Definition at line 471 of file cross_aln_render.cpp.
References m_CP.
void CCrossAlnRenderer::GetObjectSelection | ( | TConstObjects & | objs | ) | const |
Definition at line 163 of file cross_aln_render.cpp.
References CCrossPanelIR::GetObjectSelection(), and m_CrossPanel.
Referenced by CCrossAlnPane::GetObjectSelection().
CGlPane & CCrossAlnRenderer::GetRP_Q | ( | ) |
Definition at line 477 of file cross_aln_render.cpp.
References m_RP_Q.
Referenced by CCrossAlnPane::MZHH_GetScale(), CCrossAlnPane::MZHH_Scroll(), CCrossAlnPane::MZHH_SetScale(), CCrossAlnPane::MZHH_ZoomRect(), CCrossAlnPane::NormalizeQ(), CCrossAlnPane::SHH_GetModelByWindow(), CCrossAlnPane::SHH_GetWindowByModel(), CCrossAlnPane::x_GetAreaByVPPos(), and CCrossAlnPane::x_Render().
CGlPane & CCrossAlnRenderer::GetRP_S | ( | ) |
Definition at line 483 of file cross_aln_render.cpp.
References m_RP_S.
Referenced by CCrossAlnPane::MZHH_GetScale(), CCrossAlnPane::MZHH_Scroll(), CCrossAlnPane::MZHH_SetScale(), CCrossAlnPane::MZHH_ZoomRect(), CCrossAlnPane::NormalizeS(), CCrossAlnPane::SHH_GetModelByWindow(), CCrossAlnPane::SHH_GetWindowByModel(), CCrossAlnPane::x_GetAreaByVPPos(), and CCrossAlnPane::x_Render().
CConstRef< CObject_id > CCrossAlnRenderer::GetScoreId | ( | ) | const |
Definition at line 209 of file cross_aln_render.cpp.
References CCrossPanelIR::GetScoreId(), and m_CrossPanel.
Referenced by CCrossAlnPane::GetScoreId().
Definition at line 228 of file cross_aln_render.cpp.
Referenced by CCrossAlnPane::TC_NeedTooltip().
float CCrossAlnRenderer::GetZoomX_Q | ( | void | ) | const |
Definition at line 235 of file cross_aln_render.cpp.
References CGlPane::GetScaleX(), log, m_MaxZoomX_Q, m_MinZoomX, and m_RP_Q.
float CCrossAlnRenderer::GetZoomX_S | ( | void | ) | const |
Definition at line 254 of file cross_aln_render.cpp.
References CGlPane::GetScaleX(), log, m_MaxZoomX_S, m_MinZoomX, and m_RP_S.
TModelRect CCrossAlnRenderer::HitTest | ( | int | x, |
int | y | ||
) |
Definition at line 222 of file cross_aln_render.cpp.
References CCrossPanelIR::HitTest(), m_CP, and m_CrossPanel.
Referenced by CCrossAlnPane::OnLeftDblClick().
void CCrossAlnRenderer::Render | ( | void | ) |
Definition at line 175 of file cross_aln_render.cpp.
References CGlUtils::CheckGlError(), m_CP, m_CrossPanel, m_DS, m_RP_Q, m_RP_S, m_RulerPanel_Q, m_RulerPanel_S, CCrossPanelIR::Render(), and CRuler::Render().
Referenced by CCrossAlnPane::x_Render().
void CCrossAlnRenderer::ResetObjectSelection | ( | void | ) |
Definition at line 157 of file cross_aln_render.cpp.
References m_CrossPanel, and CCrossPanelIR::ResetObjectSelection().
Referenced by CCrossAlnPane::ResetObjectSelection().
void CCrossAlnRenderer::Scroll | ( | TModelUnit | dxQ, |
TModelUnit | dxS | ||
) |
Definition at line 489 of file cross_aln_render.cpp.
References m_RP_Q, m_RP_S, CGlPane::Scroll(), and x_AdjustCrossPane().
Referenced by CCrossAlnPane::Scroll().
TModelRect CCrossAlnRenderer::SelectHitTest | ( | int | x, |
int | y | ||
) |
Definition at line 215 of file cross_aln_render.cpp.
References CCrossPanelIR::HitTest(), m_CP, and m_CrossPanel.
Referenced by CCrossAlnPane::OnLeftDown().
void CCrossAlnRenderer::SetDataSource | ( | const TVPRect & | rc, |
ICrossAlnDataSource * | ds | ||
) |
Definition at line 97 of file cross_aln_render.cpp.
References m_CrossPanel, m_DS, CCrossPanelIR::SetDataSource(), and x_SetupViewPorts().
Referenced by CCrossAlnPane::SetDataSource().
void CCrossAlnRenderer::SetObjectSelection | ( | const vector< const CSeq_align * > | sel_aligns | ) |
Definition at line 169 of file cross_aln_render.cpp.
References m_CrossPanel, and CCrossPanelIR::SetObjectSelection().
Referenced by CCrossAlnPane::SetObjectSelection().
void CCrossAlnRenderer::SetScaleRef_C | ( | TModelUnit | m_x, |
TModelUnit | m_y, | ||
const TModelPoint & | point | ||
) |
Definition at line 306 of file cross_aln_render.cpp.
void CCrossAlnRenderer::SetScaleRef_Q | ( | TModelUnit | m_x, |
TModelUnit | m_y, | ||
const TModelPoint & | point | ||
) |
Definition at line 281 of file cross_aln_render.cpp.
References CGlPane::GetMinScaleX(), CGlPane::GetVisibleRect(), m_RP_Q, CGlPane::SetScaleRefPoint(), CGlRect< T >::Top(), CGlPoint< T >::X(), and x_AdjustCrossPane().
Referenced by CCrossAlnPane::MZHH_SetScale().
void CCrossAlnRenderer::SetScaleRef_S | ( | TModelUnit | m_x, |
TModelUnit | m_y, | ||
const TModelPoint & | point | ||
) |
Definition at line 294 of file cross_aln_render.cpp.
References CGlPane::GetMinScaleX(), CGlPane::GetVisibleRect(), m_RP_S, CGlPane::SetScaleRefPoint(), CGlRect< T >::Top(), CGlPoint< T >::X(), and x_AdjustCrossPane().
Referenced by CCrossAlnPane::MZHH_SetScale().
Definition at line 191 of file cross_aln_render.cpp.
References x_SetupViewPorts().
void CCrossAlnRenderer::SetZoomX_Q | ( | float | value | ) |
Definition at line 242 of file cross_aln_render.cpp.
References CGlRect< T >::CenterPoint(), CGlPane::GetScaleY(), CGlPane::GetVisibleRect(), m_MaxZoomX_Q, m_MinZoomX, m_RP_Q, CGlPane::SetScale(), rapidjson::value, and x_AdjustCrossPane().
Referenced by ZoomAll_Q(), and ZoomToSeq_Q().
void CCrossAlnRenderer::SetZoomX_S | ( | float | value | ) |
Definition at line 261 of file cross_aln_render.cpp.
References CGlRect< T >::CenterPoint(), CGlPane::GetScaleY(), CGlPane::GetVisibleRect(), m_MaxZoomX_S, m_MinZoomX, m_RP_S, CGlPane::SetScale(), rapidjson::value, and x_AdjustCrossPane().
Referenced by ZoomAll_S(), and ZoomToSeq_S().
void CCrossAlnRenderer::SquareOnRect | ( | TModelRect | rc | ) |
Definition at line 312 of file cross_aln_render.cpp.
References CGlRect< T >::Bottom(), CGlPane::GetModelLimitsRect(), CGlPane::GetScaleX(), CGlPane::GetVisibleRect(), CGlRect< T >::Left(), m_RP_Q, m_RP_S, CGlRect< T >::Right(), CGlPane::SetZoomFactor(), CGlRect< T >::Top(), x_AdjustCrossPane(), ZoomOnRange_Q(), ZoomOnRange_S(), and CGlPane::ZoomOutCenter().
Referenced by CCrossAlnPane::SquareOnRect().
void CCrossAlnRenderer::Update | ( | void | ) |
Definition at line 74 of file cross_aln_render.cpp.
References eUnknown, CBioseq_Handle::GetBioseqLength(), m_DS, m_SeqLength_Q, m_SeqLength_S, NCBI_THROW, x_AdjustCrossPane(), and x_SetupModelLimits().
Referenced by CCrossAlnPane::Update().
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Definition at line 274 of file cross_aln_render.cpp.
References CGlPane::GetViewport(), CGlPane::GetVisibleRect(), m_CrossPanel, m_RP_Q, m_RP_S, and CCrossPanelIR::SetLimits().
Referenced by Scroll(), SetScaleRef_Q(), SetScaleRef_S(), SetZoomX_Q(), SetZoomX_S(), SquareOnRect(), Update(), x_SetupModelLimits(), ZoomIn_Q(), ZoomIn_S(), ZoomOnRange_Q(), ZoomOnRange_S(), ZoomOut_Q(), and ZoomOut_S().
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Definition at line 124 of file cross_aln_render.cpp.
References CRange_Base::GetFrom(), CRange_Base::GetTo(), CGlPane::GetViewport(), CGlRect< T >::Height(), m_CP, m_DS, m_RP_Q, m_RP_S, m_RulerPanel_Q, m_RulerPanel_S, m_SeqLength_Q, m_SeqLength_S, max(), min(), CRuler::SetAutoRange(), CGlPane::SetModelLimitsRect(), CGlPane::SetVisibleRect(), CGlRect< T >::Width(), and x_AdjustCrossPane().
Referenced by Update().
Definition at line 106 of file cross_aln_render.cpp.
References CGlRect< T >::Bottom(), CGlPane::GetModelLimitsRect(), CRuler::GetVPRect(), CGlRect< T >::Height(), CGlRect< T >::Left(), log, m_CP, m_MaxZoomX_Q, m_MaxZoomX_S, m_RP_Q, m_RP_S, m_RulerPanel_Q, CGlRect< T >::Right(), CGlPane::SetViewport(), CGlRect< T >::Top(), and CGlRect< T >::Width().
Referenced by SetDataSource(), and SetViewport().
void CCrossAlnRenderer::ZoomAll_Q | ( | void | ) |
Definition at line 428 of file cross_aln_render.cpp.
References SetZoomX_Q().
Referenced by CCrossAlnPane::ZoomAll_Q().
void CCrossAlnRenderer::ZoomAll_S | ( | void | ) |
Definition at line 454 of file cross_aln_render.cpp.
References SetZoomX_S().
Referenced by CCrossAlnPane::ZoomAll_S().
void CCrossAlnRenderer::ZoomIn_Q | ( | ) |
Definition at line 414 of file cross_aln_render.cpp.
References m_RP_Q, x_AdjustCrossPane(), and CGlPane::ZoomInCenter().
Referenced by CCrossAlnPane::ZoomIn_Q().
void CCrossAlnRenderer::ZoomIn_S | ( | ) |
Definition at line 440 of file cross_aln_render.cpp.
References m_RP_S, x_AdjustCrossPane(), and CGlPane::ZoomInCenter().
Referenced by CCrossAlnPane::ZoomIn_S().
void CCrossAlnRenderer::ZoomOnRange_Q | ( | TModelUnit | from, |
TModelUnit | to | ||
) |
Definition at line 376 of file cross_aln_render.cpp.
References CGlPane::Close(), CGlPane::GetVisibleRect(), m_RP_Q, CGlPane::OpenOrtho(), CGlRect< T >::SetHorz(), CGlPane::UnProjectWidth(), x_AdjustCrossPane(), and CGlPane::ZoomRect().
Referenced by SquareOnRect(), and CCrossAlnPane::ZoomOnRange_Q().
void CCrossAlnRenderer::ZoomOnRange_S | ( | TModelUnit | from, |
TModelUnit | to | ||
) |
Definition at line 394 of file cross_aln_render.cpp.
References CGlPane::Close(), CGlPane::GetVisibleRect(), m_RP_S, CGlPane::OpenOrtho(), CGlRect< T >::SetHorz(), CGlPane::UnProjectWidth(), x_AdjustCrossPane(), and CGlPane::ZoomRect().
Referenced by SquareOnRect(), and CCrossAlnPane::ZoomOnRange_S().
void CCrossAlnRenderer::ZoomOut_Q | ( | ) |
Definition at line 421 of file cross_aln_render.cpp.
References m_RP_Q, x_AdjustCrossPane(), and CGlPane::ZoomOutCenter().
Referenced by CCrossAlnPane::ZoomOut_Q().
void CCrossAlnRenderer::ZoomOut_S | ( | ) |
Definition at line 447 of file cross_aln_render.cpp.
References m_RP_S, x_AdjustCrossPane(), and CGlPane::ZoomOutCenter().
Referenced by CCrossAlnPane::ZoomOut_S().
void CCrossAlnRenderer::ZoomToSeq_Q | ( | void | ) |
Definition at line 433 of file cross_aln_render.cpp.
References SetZoomX_Q().
Referenced by CCrossAlnPane::ZoomToSeq_Q().
void CCrossAlnRenderer::ZoomToSeq_S | ( | void | ) |
Definition at line 460 of file cross_aln_render.cpp.
References SetZoomX_S().
Referenced by CCrossAlnPane::ZoomToSeq_S().
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Definition at line 124 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), GetCP(), HitTest(), Render(), SelectHitTest(), x_SetupModelLimits(), and x_SetupViewPorts().
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Definition at line 128 of file cross_aln_render.hpp.
Referenced by ColorByScore(), ColorBySegments(), GetObjectSelection(), GetScoreId(), HitTest(), Render(), ResetObjectSelection(), SelectHitTest(), SetDataSource(), SetObjectSelection(), and x_AdjustCrossPane().
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Definition at line 121 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), Render(), SetDataSource(), Update(), and x_SetupModelLimits().
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Definition at line 138 of file cross_aln_render.hpp.
Referenced by GetZoomX_Q(), SetZoomX_Q(), and x_SetupViewPorts().
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Definition at line 138 of file cross_aln_render.hpp.
Referenced by GetZoomX_S(), SetZoomX_S(), and x_SetupViewPorts().
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Definition at line 138 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), GetZoomX_Q(), GetZoomX_S(), SetZoomX_Q(), and SetZoomX_S().
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Definition at line 123 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), GetRP_Q(), GetZoomX_Q(), Render(), Scroll(), SetScaleRef_Q(), SetZoomX_Q(), SquareOnRect(), x_AdjustCrossPane(), x_SetupModelLimits(), x_SetupViewPorts(), ZoomIn_Q(), ZoomOnRange_Q(), and ZoomOut_Q().
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Definition at line 125 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), GetRP_S(), GetZoomX_S(), Render(), Scroll(), SetScaleRef_S(), SetZoomX_S(), SquareOnRect(), x_AdjustCrossPane(), x_SetupModelLimits(), x_SetupViewPorts(), ZoomIn_S(), ZoomOnRange_S(), and ZoomOut_S().
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Definition at line 127 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), Render(), x_SetupModelLimits(), and x_SetupViewPorts().
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Definition at line 129 of file cross_aln_render.hpp.
Referenced by CCrossAlnRenderer(), Render(), and x_SetupModelLimits().
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Definition at line 131 of file cross_aln_render.hpp.
Referenced by Update(), and x_SetupModelLimits().
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Definition at line 132 of file cross_aln_render.hpp.
Referenced by Update(), and x_SetupModelLimits().