NCBI C++ ToolKit
CDense_seg Member List

This is the complete list of members for CDense_seg, including all inherited members.

AddReference(void) constCObjectinline
Assign(const CSerialObject &obj, ESerialRecursionMode how=eRecursive)CDense_segvirtual
CanBeDeleted(void) const THROWS_NONECObjectinline
CanGetDim(void) constCDense_seg_Baseinline
CanGetIds(void) constCDense_seg_Baseinline
CanGetLens(void) constCDense_seg_Baseinline
CanGetNumseg(void) constCDense_seg_Baseinline
CanGetScores(void) constCDense_seg_Baseinline
CanGetStarts(void) constCDense_seg_Baseinline
CanGetStrands(void) constCDense_seg_Baseinline
CanGetWidths(void) constCDense_seginline
CDebugDumpable(void)CDebugDumpableinline
CDense_seg(void)CDense_seg
CDense_seg(const CDense_seg &value)CDense_segprivate
CDense_seg_Base(void)CDense_seg_Base
CDense_seg_Base(const CDense_seg_Base &)CDense_seg_Baseprivate
CheckNumRows(void) constCDense_seg
CheckNumSegs(void) constCDense_seg
CheckReferenceOverflow(TCount count) constCObjectprivate
CObject(void)CObject
CObject(const CObject &src)CObject
Compact()CDense_seg
CreateRowSeq_interval(TDim row) constCDense_seg
CSerialObject(void)CSerialObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCSerialObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DECLARE_INTERNAL_TYPE_INFO()CDense_seg_Base
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DumpToConsole(void) constCDebugDumpable
E_memberIndex enum nameCDense_seg_Base
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) constCSerialObjectvirtual
ExtractRows(const vector< TDim > &rows) constCDense_seg
ExtractSlice(TDim row, TSeqPos from, TSeqPos to) constCDense_seg
FillUnaligned() constCDense_seg
FromTranscript(TSeqPos query_start, ENa_strand query_strand, TSeqPos subj_start, ENa_strand subj_strand, const string &transcript)CDense_seg
GetAllocFillMode(void)CObjectstatic
GetDim(void) constCDense_seg_Baseinline
GetIds(void) constCDense_seg_Baseinline
GetLens(void) constCDense_seg_Baseinline
GetNamespaceName(void) constCSerialObject
GetNamespacePrefix(void) constCSerialObject
GetNumseg(void) constCDense_seg_Baseinline
GetScores(void) constCDense_seg_Baseinline
GetSeq_id(TDim row) constCDense_seg
GetSeqRange(TDim row) constCDense_seginline
GetSeqStart(TDim row) constCDense_seg
GetSeqStop(TDim row) constCDense_seg
GetSeqStrand(TDim row) constCDense_seg
GetStarts(void) constCDense_seg_Baseinline
GetStrands(void) constCDense_seg_Baseinline
GetThisTypeInfo(void) const =0CSerialObjectpure virtual
GetWidths(void) constCDense_seginline
HasNamespaceName(void) constCSerialObject
HasNamespacePrefix(void) constCSerialObject
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsSetDim(void) constCDense_seg_Baseinline
IsSetIds(void) constCDense_seg_Baseinline
IsSetLens(void) constCDense_seg_Baseinline
IsSetNumseg(void) constCDense_seg_Baseinline
IsSetScores(void) constCDense_seg_Baseinline
IsSetStarts(void) constCDense_seg_Baseinline
IsSetStrands(void) constCDense_seg_Baseinline
IsSetWidths(void) constCDense_seginline
m_CounterCObjectmutableprivate
m_DimCDense_seg_Baseprivate
m_IdsCDense_seg_Baseprivate
m_LensCDense_seg_Baseprivate
m_NumsegCDense_seg_Baseprivate
m_ScoresCDense_seg_Baseprivate
m_set_StateCDense_seg_Baseprivate
m_set_State1CDense_segprivate
m_StartsCDense_seg_Baseprivate
m_StrandsCDense_seg_Baseprivate
m_WidthsCDense_segprivate
ms_UnassignedByteCSerialObjectstatic
ms_UnassignedStrCSerialObjectstatic
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
OffsetRow(TDim row, TSignedSeqPos offset)CDense_seg
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CDense_seg &value)CDense_segprivate
CSerialObject::operator=(const CObject &src) THROWS_NONECObjectinline
OrderAdjacentGaps()CDense_seg
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemapToLoc(TDim row, const CSeq_loc &loc, bool ignore_strand=false)CDense_seg
RemoveLastReference(TCount count) constCObjectprivate
RemovePureGapSegs()CDense_seg
RemoveReference(void) constCObjectinline
Reset(void)CDense_seg_Basevirtual
ResetDim(void)CDense_seg_Baseinline
ResetIds(void)CDense_seg_Base
ResetLens(void)CDense_seg_Base
ResetNumseg(void)CDense_seg_Baseinline
ResetScores(void)CDense_seg_Base
ResetStarts(void)CDense_seg_Base
ResetStrands(void)CDense_seg_Base
ResetWidths(void)CDense_seginline
Reverse(void)CDense_seg
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetDefaultDim(void)CDense_seg_Baseinline
SetDim(TDim value)CDense_seg_Baseinline
SetDim(void)CDense_seg_Baseinline
SetGlobalReserveHooks(void)CDense_segstatic
SetIds(void)CDense_seg_Baseinline
SetLens(void)CDense_seg_Baseinline
SetNumseg(TNumseg value)CDense_seg_Baseinline
SetNumseg(void)CDense_seg_Baseinline
SetReserveHooks(CObjectIStream &in)CDense_segstatic
SetScores(void)CDense_seg_Baseinline
SetStarts(void)CDense_seg_Baseinline
SetStrands(void)CDense_seg_Baseinline
SetVerifyDataGlobal(ESerialVerifyData verify)CSerialObjectstatic
SetVerifyDataThread(ESerialVerifyData verify)CSerialObjectstatic
SetWidths(void)CDense_seginline
sm_DumpEnabledCDebugDumpableprivatestatic
SwapRows(TDim row1, TDim row2)CDense_seg
TCount typedefCObject
TCounter typedefCObject
TDim typedefCDense_seg_Base
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
ThrowUnassigned(TMemberIndex index) constCSerialObject
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) constCSerialObject
TIds typedefCDense_seg_Base
TLens typedefCDense_seg_Base
TLockerType typedefCObject
TmemberIndex typedefCDense_seg_Base
TNumseg typedefCDense_seg_Base
Tparent typedefCDense_segprivate
TrimEndGaps()CDense_seg
TScores typedefCDense_seg_Base
TStarts typedefCDense_seg_Base
TStrands typedefCDense_seg_Base
TWidths typedefCDense_seg
UnassignedByte(void)CSerialObjectinlinestatic
UnassignedString(void)CSerialObjectinlinestatic
UnassignedStringUTF8(void)CSerialObjectinlinestatic
Validate(bool full_test=false) constCDense_seg
x_FindSegment(TDim row, TSignedSeqPos pos) constCDense_segprotected
x_GetVerifyData(void)CSerialObjectprivatestatic
~CDebugDumpable(void)CDebugDumpablevirtual
~CDense_seg(void)CDense_seg
~CDense_seg_Base(void)CDense_seg_Basevirtual
~CObject(void)CObjectvirtual
~CSerialObject(void)CSerialObjectvirtual
Modified on Mon Apr 22 04:00:28 2024 by modify_doxy.py rev. 669887