CDensity_coordinates_Base Class Reference

Represents ASN.1 type Density-coordinates defined in file mmdb2.asn

Search Toolkit Book for CDensity_coordinates_Base

Literal density coordinates define the chemical components whose structure is described by a density grid, parameters of this grid, and density values. More...

#include <objects/mmdb2/Density_coordinates_.hpp>

Inheritance diagram for CDensity_coordinates_Base:

Collaboration diagram for CDensity_coordinates_Base:

Public Types
enum	EFastest_varying { eFastest_varying_x = 1 , eFastest_varying_y = 2 , eFastest_varying_z = 3 }
enum	ESlowest_varying { eSlowest_varying_x = 1 , eSlowest_varying_y = 2 , eSlowest_varying_z = 3 }
enum class	E_memberIndex {   e__allMandatory = 0 , e_contents , e_grid_corners , e_grid_steps_x ,   e_grid_steps_y , e_grid_steps_z , e_fastest_varying , e_slowest_varying ,   e_scale_factor , e_density }
typedef CChem_graph_pntrs	TContents
typedef CBrick	TGrid_corners
typedef int	TGrid_steps_x
typedef int	TGrid_steps_y
typedef int	TGrid_steps_z
typedef EFastest_varying	TFastest_varying
typedef ESlowest_varying	TSlowest_varying
typedef int	TScale_factor
typedef list< int >	TDensity
typedef Tparent::CMemberIndex< E_memberIndex, 10 >	TmemberIndex
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...
typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...
typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...
typedef Uint8	TCount
	Alias for value type of counter. More...

Public Member Functions
	CDensity_coordinates_Base (void)
virtual	~CDensity_coordinates_Base (void)
	DECLARE_INTERNAL_TYPE_INFO ()
bool	IsSetContents (void) const
	Check if a value has been assigned to Contents data member. More...
bool	CanGetContents (void) const
	Check if it is safe to call GetContents method. More...
void	ResetContents (void)
	Reset Contents data member. More...
const TContents &	GetContents (void) const
	Get the Contents member data. More...
void	SetContents (TContents &value)
	Assign a value to Contents data member. More...
TContents &	SetContents (void)
	Assign a value to Contents data member. More...
bool	IsSetGrid_corners (void) const
	Check if a value has been assigned to Grid_corners data member. More...
bool	CanGetGrid_corners (void) const
	Check if it is safe to call GetGrid_corners method. More...
void	ResetGrid_corners (void)
	Reset Grid_corners data member. More...
const TGrid_corners &	GetGrid_corners (void) const
	Get the Grid_corners member data. More...
void	SetGrid_corners (TGrid_corners &value)
	Assign a value to Grid_corners data member. More...
TGrid_corners &	SetGrid_corners (void)
	Assign a value to Grid_corners data member. More...
bool	IsSetGrid_steps_x (void) const
	Check if a value has been assigned to Grid_steps_x data member. More...
bool	CanGetGrid_steps_x (void) const
	Check if it is safe to call GetGrid_steps_x method. More...
void	ResetGrid_steps_x (void)
	Reset Grid_steps_x data member. More...
TGrid_steps_x	GetGrid_steps_x (void) const
	Get the Grid_steps_x member data. More...
void	SetGrid_steps_x (TGrid_steps_x value)
	Assign a value to Grid_steps_x data member. More...
TGrid_steps_x &	SetGrid_steps_x (void)
	Assign a value to Grid_steps_x data member. More...
bool	IsSetGrid_steps_y (void) const
	Check if a value has been assigned to Grid_steps_y data member. More...
bool	CanGetGrid_steps_y (void) const
	Check if it is safe to call GetGrid_steps_y method. More...
void	ResetGrid_steps_y (void)
	Reset Grid_steps_y data member. More...
TGrid_steps_y	GetGrid_steps_y (void) const
	Get the Grid_steps_y member data. More...
void	SetGrid_steps_y (TGrid_steps_y value)
	Assign a value to Grid_steps_y data member. More...
TGrid_steps_y &	SetGrid_steps_y (void)
	Assign a value to Grid_steps_y data member. More...
bool	IsSetGrid_steps_z (void) const
	Check if a value has been assigned to Grid_steps_z data member. More...
bool	CanGetGrid_steps_z (void) const
	Check if it is safe to call GetGrid_steps_z method. More...
void	ResetGrid_steps_z (void)
	Reset Grid_steps_z data member. More...
TGrid_steps_z	GetGrid_steps_z (void) const
	Get the Grid_steps_z member data. More...
void	SetGrid_steps_z (TGrid_steps_z value)
	Assign a value to Grid_steps_z data member. More...
TGrid_steps_z &	SetGrid_steps_z (void)
	Assign a value to Grid_steps_z data member. More...
bool	IsSetFastest_varying (void) const
	Check if a value has been assigned to Fastest_varying data member. More...
bool	CanGetFastest_varying (void) const
	Check if it is safe to call GetFastest_varying method. More...
void	ResetFastest_varying (void)
	Reset Fastest_varying data member. More...
TFastest_varying	GetFastest_varying (void) const
	Get the Fastest_varying member data. More...
void	SetFastest_varying (TFastest_varying value)
	Assign a value to Fastest_varying data member. More...
TFastest_varying &	SetFastest_varying (void)
	Assign a value to Fastest_varying data member. More...
bool	IsSetSlowest_varying (void) const
	Check if a value has been assigned to Slowest_varying data member. More...
bool	CanGetSlowest_varying (void) const
	Check if it is safe to call GetSlowest_varying method. More...
void	ResetSlowest_varying (void)
	Reset Slowest_varying data member. More...
TSlowest_varying	GetSlowest_varying (void) const
	Get the Slowest_varying member data. More...
void	SetSlowest_varying (TSlowest_varying value)
	Assign a value to Slowest_varying data member. More...
TSlowest_varying &	SetSlowest_varying (void)
	Assign a value to Slowest_varying data member. More...
bool	IsSetScale_factor (void) const
	Check if a value has been assigned to Scale_factor data member. More...
bool	CanGetScale_factor (void) const
	Check if it is safe to call GetScale_factor method. More...
void	ResetScale_factor (void)
	Reset Scale_factor data member. More...
TScale_factor	GetScale_factor (void) const
	Get the Scale_factor member data. More...
void	SetScale_factor (TScale_factor value)
	Assign a value to Scale_factor data member. More...
TScale_factor &	SetScale_factor (void)
	Assign a value to Scale_factor data member. More...
bool	IsSetDensity (void) const
	Check if a value has been assigned to Density data member. More...
bool	CanGetDensity (void) const
	Check if it is safe to call GetDensity method. More...
void	ResetDensity (void)
	Reset Density data member. More...
const TDensity &	GetDensity (void) const
	Get the Density member data. More...
TDensity &	SetDensity (void)
	Assign a value to Density data member. More...
virtual void	Reset (void)
	Reset the whole object. More...
Public Member Functions inherited from CSerialObject
	CSerialObject (void)
virtual	~CSerialObject (void)
virtual const CTypeInfo *	GetThisTypeInfo (void) const =0
virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...
virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...
virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...
void	ThrowUnassigned (TMemberIndex index) const
void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...
const string &	GetNamespaceName (void) const
	Get namespace name. More...
bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...
const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...
Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...
	CObject (const CObject &src)
	Copy constructor. More...
virtual	~CObject (void)
	Destructor. More...
CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...
bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...
bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...
bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...
bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...
void	AddReference (void) const
	Add reference to object. More...
void	RemoveReference (void) const
	Remove reference to object. More...
void	ReleaseReference (void) const
	Remove reference without deleting object. More...
virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...
virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...
void *	operator new (size_t size)
	Define new operator for memory allocation. More...
void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...
void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...
void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...
void *	operator new (size_t size, void *place)
	Define new operator. More...
void	operator delete (void *ptr, void *place)
	Define delete operator. More...
void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...
void	operator delete (void *ptr, CObjectMemoryPool *place)
	Define delete operator. More...
Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)
virtual	~CDebugDumpable (void)
void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void	DumpToConsole (void) const

Static Public Member Functions
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	EFastest_varying (void)
	Access to EFastest_varying's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	ESlowest_varying (void)
	Access to ESlowest_varying's attributes (values, names) as defined in spec. More...
Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)
static void	SetVerifyDataGlobal (ESerialVerifyData verify)
static string	UnassignedString (void)
static CStringUTF8	UnassignedStringUTF8 (void)
static char	UnassignedByte (void)
Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)
static EAllocFillMode	GetAllocFillMode (void)
static void	SetAllocFillMode (EAllocFillMode mode)
static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...
Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CSerialObject	Tparent

Private Member Functions
	CDensity_coordinates_Base (const CDensity_coordinates_Base &)
CDensity_coordinates_Base &	operator= (const CDensity_coordinates_Base &)

Private Attributes
Uint4	m_set_State [1]
CRef< TContents >	m_Contents
CRef< TGrid_corners >	m_Grid_corners
int	m_Grid_steps_x
int	m_Grid_steps_y
int	m_Grid_steps_z
EFastest_varying	m_Fastest_varying
ESlowest_varying	m_Slowest_varying
int	m_Scale_factor
list< int >	m_Density

Additional Inherited Members
Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<*unassigned*>"
static const char	ms_UnassignedByte = char(0xcd)
Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...
static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...
static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...
static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...
static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount	eCounterStateMask
	Valid object, and object in heap. More...
Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Literal density coordinates define the chemical components whose structure is described by a density grid, parameters of this grid, and density values.

CDensity_coordinates_Base –

Definition at line 79 of file Density_coordinates_.hpp.

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The documentation for this class was generated from the following files:

• include/objects/mmdb2/Density_coordinates_.hpp
• src/objects/mmdb2/Density_coordinates_.cpp