Search Toolkit Book for CDesktopAlignItem

#include <gui/widgets/seq_desktop/desktop_typed_items.hpp>

Inheritance diagram for CDesktopAlignItem:

Collaboration diagram for CDesktopAlignItem:

Public Member Functions
	CDesktopAlignItem (const objects::CSeq_align_Handle &ah)

	~CDesktopAlignItem ()

virtual TLines	GetDescription (bool root=false) const

virtual wxColour	GetTextColor () const

virtual wxColour	GetFrameColor () const

virtual const wxBrush &	GetBackgroundBrush () const

virtual const string &	GetType () const

virtual bool	ShouldBeReduced () const

virtual const CObject *	GetObject (void) const

virtual objects::CSeq_entry_Handle	GetSeqentryHandle () const

objects::CSeq_align_Handle	GetAlignHandle () const

Public Member Functions inherited from IDesktopDataItem
virtual	~IDesktopDataItem ()

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static bool	s_ContainsFarPointers (const objects::CSeq_align_Handle &ah)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Attributes
objects::CSeq_align_Handle	m_Alignh

wxColour	m_Colour

Additional Inherited Members
Public Types inherited from IDesktopDataItem
typedef vector< string >	TLines

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 260 of file desktop_typed_items.hpp.

Constructor & Destructor Documentation

◆ CDesktopAlignItem()

CDesktopAlignItem::CDesktopAlignItem ( const objects::CSeq_align_Handle & ah )

Definition at line 576 of file desktop_typed_items.cpp.

References m_Alignh, m_Colour, and s_ContainsFarPointers().

◆ ~CDesktopAlignItem()

CDesktopAlignItem::~CDesktopAlignItem ( )

inline

Definition at line 264 of file desktop_typed_items.hpp.

Member Function Documentation

◆ GetAlignHandle()

objects::CSeq_align_Handle CDesktopAlignItem::GetAlignHandle ( ) const

inline

Definition at line 276 of file desktop_typed_items.hpp.

References m_Alignh.

◆ GetBackgroundBrush()

virtual const wxBrush& CDesktopAlignItem::GetBackgroundBrush ( ) const

inlinevirtual

Implements IDesktopDataItem.

Definition at line 269 of file desktop_typed_items.hpp.

◆ GetDescription()

IDesktopDataItem::TLines CDesktopAlignItem::GetDescription ( bool root = false ) const

virtual

Implements IDesktopDataItem.

Definition at line 605 of file desktop_typed_items.cpp.

References CSeq_align_Base::GetDim(), CSeq_align::GetSeq_id(), CSeq_id::GetSeqIdString(), CSeq_align_Base::IsSetDim(), kSpaces, label, m_Alignh, and row.

◆ GetFrameColor()

virtual wxColour CDesktopAlignItem::GetFrameColor ( ) const

inlinevirtual

Implements IDesktopDataItem.

Definition at line 268 of file desktop_typed_items.hpp.

References m_Colour.

◆ GetObject()

const CObject * CDesktopAlignItem::GetObject ( void ) const

virtual

Implements IDesktopDataItem.

Definition at line 626 of file desktop_typed_items.cpp.

References CConstRef< C, Locker >::GetPointerOrNull(), and m_Alignh.

◆ GetSeqentryHandle()

CSeq_entry_Handle CDesktopAlignItem::GetSeqentryHandle ( ) const

virtual

Implements IDesktopDataItem.

Definition at line 632 of file desktop_typed_items.cpp.

References CSeq_annot_Handle::GetParentEntry(), and m_Alignh.

◆ GetTextColor()

virtual wxColour CDesktopAlignItem::GetTextColor ( ) const

inlinevirtual

Implements IDesktopDataItem.

Definition at line 267 of file desktop_typed_items.hpp.

References m_Colour.

◆ GetType()

const string & CDesktopAlignItem::GetType ( void ) const

virtual

Reimplemented from IDesktopDataItem.

Definition at line 621 of file desktop_typed_items.cpp.

◆ s_ContainsFarPointers()

bool CDesktopAlignItem::s_ContainsFarPointers ( const objects::CSeq_align_Handle & ah )

static

Definition at line 586 of file desktop_typed_items.cpp.

References CSeq_align::CreateRowSeq_loc(), CSeq_align_Handle::GetAnnot(), CSeq_align_Base::GetDim(), CSeq_align_Handle::GetSeq_align(), CSeq_annot_Handle::GetTopLevelEntry(), IsFarLocation(), CSeq_align_Base::IsSetDim(), and row.

Referenced by CDesktopAlignItem(), and CDesktopAnnotItem::CDesktopAnnotItem().

◆ ShouldBeReduced()

virtual bool CDesktopAlignItem::ShouldBeReduced ( ) const

inlinevirtual

Reimplemented from IDesktopDataItem.

Definition at line 271 of file desktop_typed_items.hpp.

Member Data Documentation

◆ m_Alignh

objects::CSeq_align_Handle CDesktopAlignItem::m_Alignh

private

Definition at line 280 of file desktop_typed_items.hpp.

Referenced by CDesktopAlignItem(), GetAlignHandle(), GetDescription(), GetObject(), and GetSeqentryHandle().

◆ m_Colour

wxColour CDesktopAlignItem::m_Colour

private

Definition at line 281 of file desktop_typed_items.hpp.

Referenced by CDesktopAlignItem(), GetFrameColor(), and GetTextColor().

The documentation for this class was generated from the following files:

include/gui/widgets/seq_desktop/desktop_typed_items.hpp
src/gui/widgets/seq_desktop/desktop_typed_items.cpp

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CDesktopAlignItem()

◆ ~CDesktopAlignItem()

Member Function Documentation

◆ GetAlignHandle()

◆ GetBackgroundBrush()

◆ GetDescription()

◆ GetFrameColor()

◆ GetObject()

◆ GetSeqentryHandle()

◆ GetTextColor()

◆ GetType()

◆ s_ContainsFarPointers()

◆ ShouldBeReduced()

Member Data Documentation

◆ m_Alignh

◆ m_Colour