| Action(EActionType action) | IEditingAction | protected |
| AddReference(void) const | CObject | inline |
| Apply(const string &value) | IEditingAction | |
| CanBeDeleted(void) const THROWS_NONE | CObject | inline |
| CDebugDumpable(void) | CDebugDumpable | inline |
| CEditingActionFeatAnticodon(CSeq_entry_Handle seh, const CSeqFeatData::ESubtype subtype, const CSeqFeatData::E_Choice feat_type, const string &ncRNA_class) | CEditingActionFeatAnticodon | |
| CEditingActionFeatGbQual(CSeq_entry_Handle seh, const CSeqFeatData::ESubtype subtype, const CSeqFeatData::E_Choice feat_type, const string &ncRNA_class, const string &qual, const string &name="CEditingActionFeatGbQual") | CEditingActionFeatGbQual | |
| CheckForExistingText(CIRef< IEditingAction > action2, EActionType action_type, edit::CParseTextOptions parse_options=edit::CParseTextOptions()) | IEditingAction | |
| CheckReferenceOverflow(TCount count) const | CObject | private |
| CheckValue(void) | IEditingAction | |
| CheckValues(void) | IEditingAction | |
| CObject(void) | CObject | |
| CObject(const CObject &src) | CObject | |
| ConvertFrom(ECapChange cap_change, bool leave_on_original, const string &strip_name, IEditingAction *destination) | IEditingAction | |
| ConvertTo(const string &value, IEditingAction *source) | IEditingAction | |
| CopyFrom(IEditingAction *destination) | IEditingAction | |
| CopyTo(const string &value, IEditingAction *source) | IEditingAction | |
| DebugDump(CDebugDumpContext ddc, unsigned int depth) const | CObject | virtual |
| DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DebugDumpText(ostream &out, const string &bundle, unsigned int depth) const | CDebugDumpable | |
| DeleteThis(void) | CObject | protectedvirtual |
| DoApply(void) | IEditingAction | protected |
| DoConvertFrom(void) | IEditingAction | protected |
| DoConvertTo(void) | IEditingAction | protected |
| DoCopyFrom(void) | IEditingAction | protected |
| DoCopyTo(void) | IEditingAction | protected |
| DoDeleteThisObject(void) | CObject | virtual |
| DoEdit(void) | IEditingAction | protected |
| DoNOOP(void) | IEditingAction | protected |
| DoNotDeleteThisObject(void) | CObject | virtual |
| DoParseFrom(void) | IEditingAction | protected |
| DoParseTo(void) | IEditingAction | protected |
| DoRemove(void) | IEditingAction | protected |
| DoRemoveOutside(void) | IEditingAction | protected |
| DoSwapFrom(void) | IEditingAction | protected |
| DoSwapTo(void) | IEditingAction | protected |
| DumpToConsole(void) const | CDebugDumpable | |
| EActionType enum name | IEditingAction | |
| eActionType_Apply enum value | IEditingAction | |
| eActionType_ConvertFrom enum value | IEditingAction | |
| eActionType_ConvertTo enum value | IEditingAction | |
| eActionType_CopyFrom enum value | IEditingAction | |
| eActionType_CopyTo enum value | IEditingAction | |
| eActionType_Edit enum value | IEditingAction | |
| eActionType_NOOP enum value | IEditingAction | |
| eActionType_ParseFrom enum value | IEditingAction | |
| eActionType_ParseTo enum value | IEditingAction | |
| eActionType_Remove enum value | IEditingAction | |
| eActionType_RemoveOutside enum value | IEditingAction | |
| eActionType_SwapFrom enum value | IEditingAction | |
| eActionType_SwapTo enum value | IEditingAction | |
| EAllocFillMode enum name | CObject | |
| eAllocFillNone enum value | CObject | |
| eAllocFillPattern enum value | CObject | |
| eAllocFillZero enum value | CObject | |
| eCounterBitsCanBeDeleted | CObject | static |
| eCounterBitsInPlainHeap | CObject | static |
| eCounterBitsPlaceMask | CObject | static |
| eCounterStateMask | CObject | static |
| eCounterStep | CObject | static |
| eCounterValid | CObject | static |
| Edit(const string &find, const string &replace, macro::CMacroFunction_EditStringQual::ESearchLoc edit_loc, bool case_insensitive, bool is_regex) | IEditingAction | |
| EnableDebugDump(bool on) | CDebugDumpable | static |
| Find(EActionType action) | IEditingActionFeat | protectedvirtual |
| FindFeatForAnotherFeat(EActionType action, SAnnotSelector other_selector) | IEditingActionFeat | protected |
| FindOrCreateProtFeat(EActionType action) | IEditingActionFeat | protected |
| FindRelated(EActionType action) | IEditingActionFeat | protectedvirtual |
| FindRelatedFeatForAnotherFeat(EActionType action, SAnnotSelector other_selector) | IEditingActionFeat | protected |
| FindRelatedOrCreateProtFeat(EActionType action) | IEditingActionFeat | protected |
| GetActionCommand(void) | IEditingAction | |
| GetActionFeatSubtype() | IEditingActionFeat | inline |
| GetAllocFillMode(void) | CObject | static |
| GetChangedDescriptors(void) | IEditingAction | |
| GetChangedFeatures(void) | IEditingAction | |
| GetChangedIds(void) | IEditingAction | |
| GetChangedInstances(void) | IEditingAction | |
| GetChangedSubmitBlock(void) | IEditingAction | |
| GetChangedValues(void) | IEditingAction | |
| GetContextForDescriptors(void) | IEditingAction | |
| GetCreatedDescriptors(void) | IEditingAction | |
| GetCreatedFeatures(void) | IEditingAction | |
| GetCurrentSeqEntryHandleFromFeatHandle(CSeq_feat_Handle fh) | IEditingActionFeat | protected |
| GetDeletedDescriptors(void) | IEditingAction | |
| GetFeatHandle(void) | IEditingActionFeat | |
| GetIntervalString(const CSeq_interval &seq_int) | CEditingActionFeatAnticodon | private |
| GetName(void) const | IEditingAction | |
| GetRetranslateCdsCmd(const CSeq_feat_Handle fh, const CRef< CSeq_feat > feat, int &offset, bool create_general_only) | IEditingAction | protected |
| GetSeqSubmit(void) | IEditingAction | |
| GetUpdateMRNAProductNameCmd(const CSeq_feat_Handle fh, const CRef< CSeq_feat > feat) | IEditingAction | protected |
| GetValue(void) | CEditingActionFeatAnticodon | protectedvirtual |
| GetValues(void) | IEditingAction | |
| GoToOrigFeature(void) | IEditingActionFeat | protected |
| GoToProtFeature(void) | IEditingActionFeat | protected |
| HandleValue(const string &value) | IEditingAction | protected |
| IEditingAction(CSeq_entry_Handle seh, const string &name, CConstRef< objects::CSeq_submit > submit=CConstRef< objects::CSeq_submit >(NULL)) | IEditingAction | |
| IEditingActionFeat(CSeq_entry_Handle seh, const CSeqFeatData::ESubtype subtype, const CSeqFeatData::E_Choice feat_type, const string &ncRNA_class, const string &name) | IEditingActionFeat | |
| InitCounter(void) | CObject | inlineprivate |
| InvalidObject(void) const | CObject | private |
| IsAllocatedInPool(void) const THROWS_NONE | CObject | inline |
| IsCreateNew(EActionType action) | IEditingAction | protected |
| IsFrom(EActionType action) | IEditingAction | protected |
| IsModified() | IEditingAction | inline |
| IsNOOP(EActionType action) | IEditingAction | protected |
| IsSetValue(void) | CEditingActionFeatAnticodon | protectedvirtual |
| IsTo(EActionType action) | IEditingAction | protected |
| m_cap_change | IEditingAction | protected |
| m_case_insensitive | IEditingAction | protected |
| m_ChangedDescriptors | IEditingAction | protected |
| m_ChangedFeatures | IEditingAction | protected |
| m_ChangedIds | IEditingAction | protected |
| m_ChangedInstances | IEditingAction | protected |
| m_ChangedSubmitBlock | IEditingAction | protected |
| m_ChangedValues | IEditingAction | protected |
| m_constraint | IEditingAction | protected |
| m_ContextForDescriptors | IEditingAction | protected |
| m_Counter | CObject | mutableprivate |
| m_CreatedDescriptors | IEditingAction | protected |
| m_CreatedFeatures | IEditingAction | protected |
| m_CurrentSeqEntry | IEditingAction | protected |
| m_DeletedDescriptors | IEditingAction | protected |
| m_edit_loc | IEditingAction | protected |
| m_EditedFeat | IEditingActionFeat | protected |
| m_erase | CEditingActionFeatGbQual | protected |
| m_existing_text | IEditingAction | protected |
| m_Feat | IEditingActionFeat | protected |
| m_find | IEditingAction | protected |
| m_GBqual | CEditingActionFeatGbQual | protected |
| m_is_regex | IEditingAction | protected |
| m_leave_on_original | IEditingAction | protected |
| m_max_records | IEditingAction | protected |
| m_modified | IEditingAction | protected |
| m_Name | IEditingAction | protected |
| m_ncRNAclass | IEditingActionFeat | protected |
| m_Other | IEditingAction | protected |
| m_parse_options | IEditingAction | protected |
| m_qual | CEditingActionFeatGbQual | protected |
| m_remove_options | IEditingAction | protected |
| m_replace | IEditingAction | protected |
| m_retranslate_cds | IEditingAction | protected |
| m_saved_feat_enabled | IEditingActionFeat | protected |
| m_SavedEditedFeat | IEditingActionFeat | protected |
| m_SavedFeat | IEditingActionFeat | protected |
| m_scope | IEditingActionFeat | protected |
| m_selector | IEditingActionFeat | protected |
| m_SeqSubmit | IEditingAction | protected |
| m_strip_name | IEditingAction | protected |
| m_TopSeqEntry | IEditingAction | protected |
| m_update_mrna | IEditingAction | protected |
| m_value | IEditingAction | protected |
| MatchBioseqConstraintForFeatHandle(CSeq_feat_Handle fh) | IEditingActionFeat | protected |
| Modify(EActionType action) | CEditingActionFeatGbQual | protectedvirtual |
| NOOP(void) | IEditingAction | |
| ObjectStateCanBeDeleted(TCount count) | CObject | inlineprivatestatic |
| ObjectStateIsAllocatedInPool(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateReferencedOnlyOnce(TCount count) | CObject | inlineprivatestatic |
| ObjectStateUnreferenced(TCount count) | CObject | inlineprivatestatic |
| ObjectStateValid(TCount count) | CObject | inlineprivatestatic |
| operator delete(void *ptr) | CObject | |
| operator delete(void *ptr, void *place) | CObject | |
| operator delete(void *ptr, CObjectMemoryPool *place) | CObject | |
| operator delete[](void *ptr) | CObject | |
| operator new(size_t size) | CObject | |
| operator new(size_t size, void *place) | CObject | |
| operator new(size_t size, CObjectMemoryPool *place) | CObject | |
| operator new[](size_t size) | CObject | |
| operator=(const CObject &src) THROWS_NONE | CObject | inline |
| OtherFeatIs(const CSeqFeatData::ESubtype subtype) | IEditingActionFeat | protected |
| ParseFrom(edit::CParseTextOptions parse_options, IEditingAction *destination) | IEditingAction | |
| ParseTo(const string &value, IEditingAction *source) | IEditingAction | |
| Referenced(void) const THROWS_NONE | CObject | inline |
| ReferencedOnlyOnce(void) const THROWS_NONE | CObject | inline |
| ReleaseReference(void) const | CObject | |
| Remove(void) | IEditingAction | |
| RemoveGeneXref(void) | IEditingActionFeat | protected |
| RemoveLastReference(TCount count) const | CObject | private |
| RemoveOutside(CRef< macro::CRemoveTextOptions > options) | IEditingAction | |
| RemoveReference(void) const | CObject | inline |
| ResetChangedDescriptors(void) | IEditingAction | |
| ResetChangedFeatures(void) | IEditingAction | |
| ResetChangedIds(void) | IEditingAction | |
| ResetChangedInstances(void) | IEditingAction | |
| ResetChangedValues(void) | IEditingAction | |
| ResetScope() | IEditingActionFeat | protectedvirtual |
| ResetValue(void) | CEditingActionFeatAnticodon | protectedvirtual |
| s_GetncRNAClass(const objects::CRNA_ref &rna_ref) | IEditingActionFeat | static |
| s_IsSetncRNAClass(const objects::CRNA_ref &rna_ref) | IEditingActionFeat | static |
| SameObject() | IEditingActionFeat | protectedvirtual |
| SetAllocFillMode(EAllocFillMode mode) | CObject | static |
| SetAllocFillMode(const string &value) | CObject | static |
| SetConstraint(CRef< CEditingActionConstraint > constraint) | IEditingAction | |
| SetCurrentSeqEntry(CSeq_entry_Handle seh) | IEditingAction | |
| SetExistingText(edit::EExistingText existing_text) | IEditingAction | |
| SetFeat(CSeq_feat_Handle fh) | IEditingActionFeat | virtual |
| SetFeatForAnotherFeat(CSeq_feat_Handle fh, const CSeqFeatData::ESubtype subtype) | IEditingActionFeat | protected |
| SetMaxRecords(size_t max) | IEditingAction | inline |
| SetRetranslateCds(bool value) | IEditingAction | inline |
| SetTopSeqEntry(CSeq_entry_Handle seh) | IEditingAction | |
| SetUpdateMRNAProduct(bool value) | IEditingAction | inline |
| SetValue(const string &value) | CEditingActionFeatAnticodon | protectedvirtual |
| sm_DumpEnabled | CDebugDumpable | privatestatic |
| SwapContext(IEditingAction *source) | IEditingActionFeat | protectedvirtual |
| SwapFrom(IEditingAction *destination) | IEditingAction | |
| SwapTo(const string &value, IEditingAction *source) | IEditingAction | |
| TCount typedef | CObject | |
| TCounter typedef | CObject | |
| ThrowNullPointerException(void) | CObject | static |
| ThrowNullPointerException(const type_info &type) | CObject | static |
| TLockerType typedef | CObject | |
| x_FindGeneForFeature(const CSeq_loc &loc, CScope &scope, CSeqFeatData::ESubtype subtype) | IEditingActionFeat | |
| x_GetSublocOnBioseq(CBioseq_Handle bsh, const CSeq_loc &loc) | IEditingActionFeat | protected |
| x_MergeFeatureLocation(const CSeq_loc &loc, CScope &scope) | IEditingActionFeat | protected |
| x_TestGeneForFeature(const CSeq_loc &gene_loc, const CSeq_loc &feat_loc, CScope &scope, bool &exact, TSeqPos &diff) | IEditingActionFeat | protected |
| ~CDebugDumpable(void) | CDebugDumpable | virtual |
| ~CObject(void) | CObject | virtual |
| ~IEditingAction() | IEditingAction | inlinevirtual |
