CExportTableDlg Class Reference

Search Toolkit Book for CExportTableDlg

#include <gui/packages/pkg_sequence_edit/export_table.hpp>

Inheritance diagram for CExportTableDlg:

Collaboration diagram for CExportTableDlg:

Public Member Functions
	CExportTableDlg ()
	Constructors. More...
	CExportTableDlg (wxWindow *parent, objects::CSeq_entry_Handle seh, wxWindowID id=ID_EXPORT_TABLE_DLG, const wxString &caption=_("Export Table"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
bool	Create (wxWindow *parent, wxWindowID id=ID_EXPORT_TABLE_DLG, const wxString &caption=_("Export Table"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
	Creation. More...
	~CExportTableDlg ()
	Destructor. More...
void	Init ()
	Initialises member variables. More...
void	CreateControls ()
	Creates the controls and sizers. More...
wxBitmap	GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	GetIconResource (const wxString &name)
	Retrieves icon resources. More...
void	SaveTable (const wxString &workDir=wxEmptyString)
void	SaveTableFile (wxWindow *parent, wxString &save_file_dir, wxString &save_file_name, const list< map< string, string > > &table, const set< string > &columns)
Public Member Functions inherited from CReportEditingDialog
virtual bool	Show (bool show=1)
	Report opening events in dialogs used in the editing package. More...

Static Public Member Functions
static bool	ShowToolTips ()
	Should we show tooltips? More...
static void	RemoveEmptyColsAndRows (CRef< CSeq_table > values_table)

Private Types
enum	{   ID_EXPORT_TABLE_DLG = 12100 , ID_EXPTABLE_CHKBOX1 , ID_EXPTABLE_LISTBOX , ID_EXPTABLE_RADBTN1 ,   ID_EXPTABLE_RADBTN2 , ID_EXPTABLE_RADBTN3 , ID_EXPTABLE_RADBTN4 , ID_EXPTABLE_RADBTN5 ,   ID_EXPTABLE_RADBTN6 , ID_EXPTABLE_RADBTN7 , ID_EXPTABLE_CHKBOX2 }

Private Member Functions
void	AddBioSource (const CBioSource &biosource)
void	GetDesc (const CSeq_entry &se)
void	FindBioSource (objects::CSeq_entry_Handle tse)
void	AddDeflinesToTable (list< map< string, string > > &table, set< string > &columns)
void	AddCdsGeneMrnaTable (list< map< string, string > > &table, set< string > &columns)
void	AddFeaturesToTable (list< map< string, string > > &table, set< string > &columns)
void	AddPubsToTable (list< map< string, string > > &table, set< string > &columns)
void	AddDblinkToTable (list< map< string, string > > &table, set< string > &columns)
void	AddRnaToTable (list< map< string, string > > &table, set< string > &columns)
void	AddSourceToTable (list< map< string, string > > &table, set< string > &columns)
void	RunExcel (wxString FileName)

Private Attributes
objects::CSeq_entry_Handle	m_TopSeqEntry
wxCheckBox *	m_SourceCheck
wxCheckBox *	m_ExcelCheck
wxRadioButton *	m_NoneRB
wxRadioButton *	m_FeatureRB
wxRadioButton *	m_CdsGeneProtRB
wxRadioButton *	m_RnaRB
wxRadioButton *	m_PubRB
wxRadioButton *	m_DbLinkRB
wxRadioButton *	m_DeflineRB
wxListBox *	m_SourceChoice
set< string >	m_source_choices
wxString	m_SaveFileDir
wxString	m_SaveFileName

Detailed Description

Definition at line 74 of file export_table.hpp.

Member Enumeration Documentation

anonymous enum

anonymous enum

private

Enumerator
ID_EXPORT_TABLE_DLG
ID_EXPTABLE_CHKBOX1
ID_EXPTABLE_LISTBOX
ID_EXPTABLE_RADBTN1
ID_EXPTABLE_RADBTN2
ID_EXPTABLE_RADBTN3
ID_EXPTABLE_RADBTN4
ID_EXPTABLE_RADBTN5
ID_EXPTABLE_RADBTN6
ID_EXPTABLE_RADBTN7
ID_EXPTABLE_CHKBOX2

Definition at line 130 of file export_table.hpp.

Constructor & Destructor Documentation

CExportTableDlg() [1/2]

CExportTableDlg::CExportTableDlg

(

)

Constructors.

Definition at line 79 of file export_table.cpp.

References Init().

CExportTableDlg() [2/2]

CExportTableDlg::CExportTableDlg	(	wxWindow *	parent,
		objects::CSeq_entry_Handle	seh,
		wxWindowID	id = ID_EXPORT_TABLE_DLG,
		const wxString &	caption = _("Export Table"),
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxDefaultSize,
		long	style = wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL
	)

Definition at line 84 of file export_table.cpp.

References Create(), FindBioSource(), Init(), m_TopSeqEntry, and ncbi::grid::netcache::search::fields::size.

~CExportTableDlg()

CExportTableDlg::~CExportTableDlg

(

)

Destructor.

Definition at line 110 of file export_table.cpp.

Member Function Documentation

AddBioSource()

void CExportTableDlg::AddBioSource ( const CBioSource &  biosource )

private

Definition at line 216 of file export_table.cpp.

References NStr::EqualNocase(), COrgMod_Base::eSubtype_bio_material, COrgMod_Base::eSubtype_culture_collection, COrgMod_Base::eSubtype_specimen_voucher, FOR_EACH_ORGMOD_ON_BIOSOURCE, FOR_EACH_SUBSOURCE_ON_BIOSOURCE, GetSubtypeName(), CBioSource::GetTaxname(), set< Key, Compare >::insert(), NStr::IsBlank(), CBioSource::IsSetTaxname(), kHost, kNatHost, kOrgModNote, kSubSourceNote, m_source_choices, and ToStdString().

Referenced by FindBioSource(), and GetDesc().

AddCdsGeneMrnaTable()

void CExportTableDlg::AddCdsGeneMrnaTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 332 of file export_table.cpp.

References CreateAction(), CSeq_id::eContent, CFieldNamePanel::eFieldType_CDSGeneProt, eGetId_Best, map_checker< Container >::empty(), set< Key, Compare >::end(), CSeqFeatData::eSubtype_cdregion, CSeqFeatData::eSubtype_gene, CSeqFeatData::eSubtype_mRNA, CSeqFeatData::eSubtype_prot, set< Key, Compare >::find(), IEditingActionFeat::GetActionFeatSubtype(), CScope::GetBioseqHandle(), CSeq_feat_Handle::GetFeatSubtype(), GetId(), CSeq_id::GetLabel(), CSeq_feat_Handle::GetLocation(), CSeq_feat_Handle::GetProduct(), CMappedFeat::GetSeq_feat_Handle(), IEditingAction::GetValues(), set< Key, Compare >::insert(), CSeq_feat_Handle::IsSetProduct(), m_TopSeqEntry, NULL, prot, IEditingActionFeat::SetFeat(), table, value, and IEditingActionFeat::x_FindGeneForFeature().

Referenced by SaveTable().

AddDblinkToTable()

void CExportTableDlg::AddDblinkToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 880 of file export_table.cpp.

References CreateAction(), CSeqdesc_Base::e_User, CSeq_id::eContent, CFieldNamePanel::eFieldType_DBLink, eGetId_Best, map_checker< Container >::empty(), NStr::EqualNocase(), CDBLinkFieldType::GetFieldNames(), GetId(), CSeq_id::GetLabel(), IEditingAction::GetValues(), set< Key, Compare >::insert(), m_TopSeqEntry, IEditingActionDesc::SetDesc(), table, and value.

Referenced by SaveTable().

AddDeflinesToTable()

void CExportTableDlg::AddDeflinesToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 772 of file export_table.cpp.

References CSeqdesc_Base::e_Title, CSeq_id::eContent, eGetId_Best, GetId(), CSeq_id::GetLabel(), CSeqdesc_Base::GetTitle(), set< Key, Compare >::insert(), m_TopSeqEntry, table, and value.

Referenced by SaveTable().

AddFeaturesToTable()

void CExportTableDlg::AddFeaturesToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 800 of file export_table.cpp.

References CSeq_id::eContent, eGetId_Best, map_checker< Container >::empty(), FOR_EACH_GBQUAL_ON_SEQFEAT, CScope::GetBioseqHandle(), GetId(), CSeq_id::GetLabel(), set< Key, Compare >::insert(), m_TopSeqEntry, CSeqFeatData::SubtypeValueToName(), table, and value.

Referenced by SaveTable().

AddPubsToTable()

void CExportTableDlg::AddPubsToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 835 of file export_table.cpp.

References CreateAction(), CSeqdesc_Base::e_Pub, CSeq_id::eContent, CFieldNamePanel::eFieldType_Pub, eGetId_Best, map_checker< Container >::empty(), CPubFieldType::GetFieldNames(), GetId(), CSeq_id::GetLabel(), IEditingAction::GetValues(), set< Key, Compare >::insert(), m_TopSeqEntry, IEditingActionDesc::SetDesc(), table, and value.

Referenced by SaveTable().

AddRnaToTable()

void CExportTableDlg::AddRnaToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 501 of file export_table.cpp.

References CreateAction(), CSeqFeatData_Base::e_Rna, CSeq_id::eContent, CFieldNamePanel::eFieldType_RNA, eGetId_Best, map_checker< Container >::empty(), CSeqFeatData::eSubtype_any, CSeqFeatData::eSubtype_gene, CSeqFeatData::eSubtype_ncRNA, CSeqFeatData::eSubtype_tmRNA, CSeqFeatData::eSubtype_tRNA, IEditingActionFeat::GetActionFeatSubtype(), CScope::GetBioseqHandle(), GetId(), CSeq_id::GetLabel(), IEditingAction::GetValues(), set< Key, Compare >::insert(), m_TopSeqEntry, NULL, rna, IEditingActionFeat::SetFeat(), table, value, and IEditingActionFeat::x_FindGeneForFeature().

Referenced by SaveTable().

AddSourceToTable()

void CExportTableDlg::AddSourceToTable ( list< map< string, string > > &  table, set< string > &  columns  )

private

Definition at line 615 of file export_table.cpp.

References map_checker< Container >::begin(), set< Key, Compare >::begin(), CreateAction(), CSeqFeatData_Base::e_Biosrc, CSeqdesc_Base::e_Source, CSeq_id::eContent, CFieldNamePanel::eFieldType_Source, eGetId_Best, map_checker< Container >::empty(), map_checker< Container >::end(), set< Key, Compare >::end(), GetId(), CSeq_id::GetLabel(), IEditingAction::GetValues(), i, set< Key, Compare >::insert(), m_source_choices, m_SourceChoice, m_TopSeqEntry, IEditingActionBiosource::SetDesc(), IEditingActionBiosource::SetFeat(), table, and value.

Referenced by SaveTable().

Create()

bool CExportTableDlg::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_EXPORT_TABLE_DLG,
		const wxString &	caption = _("Export Table"),
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxDefaultSize,
		long	style = wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL
	)

Creation.

Definition at line 94 of file export_table.cpp.

References CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CExportTableDlg().

CreateControls()

void CExportTableDlg::CreateControls

(

)

Creates the controls and sizers.

Definition at line 124 of file export_table.cpp.

References _, set< Key, Compare >::begin(), set< Key, Compare >::end(), ID_EXPTABLE_CHKBOX1, ID_EXPTABLE_CHKBOX2, ID_EXPTABLE_LISTBOX, ID_EXPTABLE_RADBTN1, ID_EXPTABLE_RADBTN2, ID_EXPTABLE_RADBTN3, ID_EXPTABLE_RADBTN4, ID_EXPTABLE_RADBTN5, ID_EXPTABLE_RADBTN6, ID_EXPTABLE_RADBTN7, m_CdsGeneProtRB, m_DbLinkRB, m_DeflineRB, m_ExcelCheck, m_FeatureRB, m_NoneRB, m_PubRB, m_RnaRB, m_source_choices, m_SourceCheck, m_SourceChoice, ToWxString(), and wxID_ANY.

Referenced by Create().

FindBioSource()

void CExportTableDlg::FindBioSource ( objects::CSeq_entry_Handle  tse )

private

Definition at line 279 of file export_table.cpp.

References AddBioSource(), CSeqFeatData_Base::e_Biosrc, CSeqFeatData_Base::GetBiosrc(), CSeq_feat_Handle::GetData(), and GetDesc().

Referenced by CExportTableDlg().

GetBitmapResource()

wxBitmap CExportTableDlg::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Get bitmap resources

Definition at line 198 of file export_table.cpp.

GetDesc()

void CExportTableDlg::GetDesc ( const CSeq_entry &  se )

private

Definition at line 262 of file export_table.cpp.

References AddBioSource(), FOR_EACH_SEQDESC_ON_SEQENTRY, FOR_EACH_SEQENTRY_ON_SEQSET, CSeq_entry_Base::GetSet(), and CSeq_entry_Base::IsSet().

Referenced by FindBioSource().

GetIconResource()

wxIcon CExportTableDlg::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Get icon resources

Definition at line 209 of file export_table.cpp.

Init()

void CExportTableDlg::Init

(

void

)

Initialises member variables.

Member initialisation

Definition at line 119 of file export_table.cpp.

References m_ExcelCheck, and NULL.

Referenced by CExportTableDlg().

RemoveEmptyColsAndRows()

void CExportTableDlg::RemoveEmptyColsAndRows ( CRef< CSeq_table >  values_table )

static

Definition at line 711 of file export_table.cpp.

References CSeq_table_Base::GetNum_rows(), i, CSeq_table_Base::SetColumns(), CSeq_table_Base::SetNum_rows(), and ncbi::grid::netcache::search::fields::size.

Referenced by CSequenceEditingEventHandler::ExportStructuredCommentsTable().

RunExcel()

void CExportTableDlg::RunExcel ( wxString  FileName )

private

Definition at line 988 of file export_table.cpp.

References wxT.

Referenced by SaveTable().

SaveTable()

void CExportTableDlg::SaveTable

(

const wxString &

workDir = wxEmptyString

)

Definition at line 289 of file export_table.cpp.

References AddCdsGeneMrnaTable(), AddDblinkToTable(), AddDeflinesToTable(), AddFeaturesToTable(), AddPubsToTable(), AddRnaToTable(), AddSourceToTable(), m_CdsGeneProtRB, m_DbLinkRB, m_DeflineRB, m_ExcelCheck, m_FeatureRB, m_PubRB, m_RnaRB, m_SaveFileDir, m_SaveFileName, m_SourceCheck, RunExcel(), SaveTableFile(), and table.

Referenced by CSequenceEditingEventHandler::ExportTable(), and CEditingBtnsPanel::ExportTable().

SaveTableFile()

void CExportTableDlg::SaveTableFile	(	wxWindow *	parent,
		wxString &	save_file_dir,
		wxString &	save_file_name,
		const list< map< string, string > > &	table,
		const set< string > &	columns
	)

Definition at line 929 of file export_table.cpp.

References _, set< Key, Compare >::empty(), CCSVExporter::Field(), CCSVExporter::NewRow(), out(), table, and wxT.

Referenced by SaveTable().

ShowToolTips()

bool CExportTableDlg::ShowToolTips ( )

static

Should we show tooltips?

Should we show tooltips?

Definition at line 189 of file export_table.cpp.

Member Data Documentation

m_CdsGeneProtRB

wxRadioButton * CExportTableDlg::m_CdsGeneProtRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_DbLinkRB

wxRadioButton * CExportTableDlg::m_DbLinkRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_DeflineRB

wxRadioButton * CExportTableDlg::m_DeflineRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_ExcelCheck

wxCheckBox * CExportTableDlg::m_ExcelCheck

private

Definition at line 124 of file export_table.hpp.

Referenced by CreateControls(), Init(), and SaveTable().

m_FeatureRB

wxRadioButton * CExportTableDlg::m_FeatureRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_NoneRB

wxRadioButton* CExportTableDlg::m_NoneRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls().

m_PubRB

wxRadioButton * CExportTableDlg::m_PubRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_RnaRB

wxRadioButton * CExportTableDlg::m_RnaRB

private

Definition at line 125 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_SaveFileDir

wxString CExportTableDlg::m_SaveFileDir

private

Definition at line 128 of file export_table.hpp.

Referenced by SaveTable().

m_SaveFileName

wxString CExportTableDlg::m_SaveFileName

private

Definition at line 128 of file export_table.hpp.

Referenced by SaveTable().

m_source_choices

set<string> CExportTableDlg::m_source_choices

private

Definition at line 127 of file export_table.hpp.

Referenced by AddBioSource(), AddSourceToTable(), and CreateControls().

m_SourceCheck

wxCheckBox* CExportTableDlg::m_SourceCheck

private

Definition at line 124 of file export_table.hpp.

Referenced by CreateControls(), and SaveTable().

m_SourceChoice

wxListBox* CExportTableDlg::m_SourceChoice

private

Definition at line 126 of file export_table.hpp.

Referenced by AddSourceToTable(), and CreateControls().

m_TopSeqEntry

objects::CSeq_entry_Handle CExportTableDlg::m_TopSeqEntry

private

Definition at line 123 of file export_table.hpp.

Referenced by AddCdsGeneMrnaTable(), AddDblinkToTable(), AddDeflinesToTable(), AddFeaturesToTable(), AddPubsToTable(), AddRnaToTable(), AddSourceToTable(), and CExportTableDlg().

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The documentation for this class was generated from the following files:

• include/gui/packages/pkg_sequence_edit/export_table.hpp
• src/gui/packages/pkg_sequence_edit/export_table.cpp