NCBI C++ ToolKit
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CFastIScore Class Reference

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#include "nucprot.hpp"
(Private to src/algo/align/prosplign.)

+ Collaboration diagram for CFastIScore:

Public Member Functions

void SetAmin (char amin, const CSubstMatrix &matrix)
 
void Init (const CNSeq &seq, const CSubstMatrix &matrix)
 
int GetScore ()
 
int GetScore (int n1, int n2, int n3) const
 
 CFastIScore ()
 

Private Member Functions

void Init (const CSubstMatrix &matrix)
 
 CFastIScore (const CFastIScore &)
 
CFastIScoreoperator= (const CFastIScore &)
 

Private Attributes

vector< intm_scores
 
intm_pos
 
int m_size
 
intm_gpos
 
vector< intm_gscores
 
bool m_init
 

Detailed Description

Definition at line 143 of file nucprot.hpp.

Constructor & Destructor Documentation

◆ CFastIScore() [1/2]

CFastIScore::CFastIScore ( )
inline

Definition at line 150 of file nucprot.hpp.

References m_scores.

◆ CFastIScore() [2/2]

CFastIScore::CFastIScore ( const CFastIScore )
private

Member Function Documentation

◆ GetScore() [1/2]

int CFastIScore::GetScore ( void  )
inline

Definition at line 148 of file nucprot.hpp.

References m_pos.

Referenced by AlignFNog(), FindFGapIntronNog(), FrAlignFNog1(), Init(), and CFIntron::InitW12s().

◆ GetScore() [2/2]

int CFastIScore::GetScore ( int  n1,
int  n2,
int  n3 
) const
inline

Definition at line 149 of file nucprot.hpp.

References m_gpos.

◆ Init() [1/2]

void CFastIScore::Init ( const CNSeq seq,
const CSubstMatrix matrix 
)

◆ Init() [2/2]

void CFastIScore::Init ( const CSubstMatrix matrix)
private

Definition at line 150 of file nucprot.cpp.

References arr, i, CSubstMatrix::m_alphabet, m_gscores, m_init, CSubstMatrix::MultScore(), nA, nC, nG, nN, and nT.

◆ operator=()

CFastIScore& CFastIScore::operator= ( const CFastIScore )
private

◆ SetAmin()

void CFastIScore::SetAmin ( char  amin,
const CSubstMatrix matrix 
)

Member Data Documentation

◆ m_gpos

int* CFastIScore::m_gpos
private

Definition at line 156 of file nucprot.hpp.

Referenced by GetScore(), Init(), and SetAmin().

◆ m_gscores

vector<int> CFastIScore::m_gscores
private

Definition at line 157 of file nucprot.hpp.

Referenced by Init(), and SetAmin().

◆ m_init

bool CFastIScore::m_init
private

Definition at line 159 of file nucprot.hpp.

Referenced by Init().

◆ m_pos

int* CFastIScore::m_pos
private

Definition at line 153 of file nucprot.hpp.

Referenced by GetScore(), and SetAmin().

◆ m_scores

vector<int> CFastIScore::m_scores
private

Definition at line 152 of file nucprot.hpp.

Referenced by CFastIScore(), Init(), and SetAmin().

◆ m_size

int CFastIScore::m_size
private

Definition at line 154 of file nucprot.hpp.

Referenced by Init(), and SetAmin().


The documentation for this class was generated from the following files:
Modified on Sat May 25 14:17:14 2024 by modify_doxy.py rev. 669887