#include <gui/widgets/seq_graphic/feature_panel.hpp>

Inheritance diagram for CFeaturePanel:

Collaboration diagram for CFeaturePanel:

Public Types
typedef map< string, string >	TTrackSettings
	key-value pair for track settings More...

typedef list< TTrackSettings >	TTrackSettingsSet

typedef list< CWeakRef< CSeqGlyph > >	TSelectedGlyphs

typedef CSeqGraphicImageInfo	TImageInfo

Public Types inherited from CTrackContainer
typedef CTempTrackProxy::TTrackProxies	TTrackProxies

typedef ILayoutTrackFactory::TTrackMap	TTrackMap

typedef ILayoutTrackFactory::TAnnotMetaDataList	TAnnotMetaDataList

typedef list< string >	TUsedAnnots
	explicitly named annots used by a track. More...

typedef map< string, CIRef< ILayoutTrackFactory > >	TFactoryMap

typedef vector< string >	TNAAs

Public Types inherited from CGlyphContainer
typedef vector< CRef< CCommentGlyph > >	TComments

typedef set< string >	THighlights

typedef map< string, THighlights >	TKeyHighlights

Public Types inherited from CLayoutTrack
enum	FTrackAttr { fMovable = 1 << 0 , fCollapsible = 1 << 1 , fFrameVisible = 1 << 2 , fShowTitle = 1 << 3 , fShowAlways = 1 << 4 , fFullTrack = 1 << 5 , fNavigable = 1 << 6 , fShowIcons = 1 << 7 , fDefaultAttr }

typedef vector< CConstRef< CSeqGlyph > >	TLayObjVector

typedef unsigned	TTrackAttrFlags

typedef list< CRef< CLayoutTrack > >	TLayoutTracks

typedef map< string, string >	TKeyValuePairs

Public Types inherited from CSeqGlyph
enum	ENeighbours { eNghbrs_None = 0x0 , eNghbrs_Left = 0x1 , eNghbrs_Right = 0x2 , eNghbrs_Both = 0x3 }

typedef vector< CHTMLActiveArea >	TAreaVector

typedef list< CRef< CSeqGlyph > >	TObjects

typedef list< CConstRef< CSeqGlyph > >	TConstObjects

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Types inherited from CEventHandler
enum	EDispatch { eDispatch_SelfOnly , eDispatch_AllHandlers , eDispatch_FirstHandler , eDispatch_Default = eDispatch_AllHandlers }
	enum controlling dispatching strategies More...

enum	EPoolName { ePool_Default = 0 , ePool_Parent , ePool_Child , ePool_Sibling , ePool_NextAvailable }
	Identifiers for standard pools. More...

typedef vector< CEventHandler * >	TListeners

typedef map< int, TListeners >	TPools

typedef list< AutoPtr< SPostRequest > >	TPostRequests

typedef std::map< CEventHandler *, int >	THandlerToCount

typedef void(*	FOnPostCallback) ()

Public Member Functions
	CFeaturePanel (CRenderingContext *r_cntx, bool cgi_mode)

virtual	~CFeaturePanel ()

void	SetDSContext (ISGDataSourceContext *ds_ctx)

void	SetInputObject (SConstScopedObject &obj)

void	SetNonAsnInput (const INonAsnTrackData &data)

void	ConfigureTracks ()

void	OnDataChanging ()

void	OnDataChanged ()

void	SetSelectedFeats (const TSelectedGlyphs &feats)

void	SetSelectedCDSFeats (const TSelectedGlyphs &cds_feats)

void	SetExternalGlyphs (const CSeqGlyph::TObjects &objs)

void	UpdateGridStep (int step)

void	SetAssembly (const string &assembly)

void	ShowConfigureTracksDlg (const string &category)

CMappedFeatOrObject	FindText (const string &text, bool match_case)

virtual void	ResetSearch ()

void	SetServiceLocator (IServiceLocator *s)

void	SetImageInfo (TImageInfo *info)
	Optional image info structure to return data to (cgi) caller. More...

void	LoadDefaultTracks ()
	Reset tracks to the original default track list. More...

void	SaveTrackConfig ()

void	SetConfigKey (const string &config_key)

void	SetDiscoverTracks (bool value=true)

set< string >	GetAnnotNames ()

void	SetDefaultAssembly (const string &defaultAssembly)

bool	AssemblyLoaded () const

const vector< CRef< objects::CGC_Assembly > > &	GetAssemblies () const

string	GetCurrentAssembly () const

CSeqGlyph virtual method.
virtual void	Update (bool layout_only)
	Update content and layout including the bounding box. More...

virtual CRef< CSeqGlyph >	HitTest (const TModelPoint &p)
	Hit testing. More...

virtual bool	HitTestHor (TSeqPos x, const CObject *obj)

cgi mode-related methods
Reset the track configuration with input settings.
void	SetTrackConfig (const TTrackSettingsSet &settings_set)

void	SetTrackConfig (const TTrackProxies &track_settings)

void	SkipGenuineCheck ()
	skip track existence verification. More...

void	ShowTrack (const string &track_key)
	Turn on an existing track. More...

CLayoutTrack public methods.
virtual const CTrackTypeInfo &	GetTypeInfo () const

ITrackInitObserver interface implementation.
virtual void	OnTrackInitFinished (const CLayoutTrack *sender)

Public Member Functions inherited from CTrackContainer
	CTrackContainer (CRenderingContext r_cntx, CFeaturePanelDS ds=NULL)

virtual	~CTrackContainer ()

virtual void	GetHTMLActiveAreas (TAreaVector *p_areas) const
	Get html active areas. More...

virtual void	DeleteAllJobs ()

virtual bool	AllJobsFinished () const

bool	AllTracksCreated () const

void	AddTrackProxy (CTempTrackProxy *proxy, bool upgateMsg=true)
	Add a track proxy. More...

CTrackProxy *	AddNewTrack (const string &track_key, const CTrackProxy::TAnnots &annots, const string &disp_name, const string &name="", const string &filter="", const string &sub_key="")
	Add a new empty track proxy. More...

void	AddNewTrack (CTrackProxy *proxy)

void	AddTracks (CTempTrackProxy *t_proxy, TTrackMap &tracks)
	add sub tracks after tracks get created. More...

void	SaveTrackStates (int order)
	Save track states to it proxy. More...

void	ClearTracks ()
	Remove all tracks. More...

string	GetUniqueTrackName (const string &name) const

CTrackContainer *	GetChildContainerTrack (const string &name)
	Get a child track container track. More...

CFeaturePanelDS *	GetDS ()

void	ExpandAll (bool expand)
	expand or collapse this track and its subtracks recursively. More...

void	ShowAll (bool shown, bool recursive=true)
	turn on/off all children tracks (recursively). More...

void	SortChildTracksByOrder ()

void	RemoveEmptyTracks ()
	remove the empty tracks recursively from bottom to top. More...

const TTrackProxies &	GetSubtrackProxies () const
	CTrackContainer inline methods. More...

TTrackProxies &	GetSubtrackProxies ()

void	SetSubtrackProxies (const TTrackProxies &proxies)

void	SetConfigMgr (CTrackConfigManager *cfg_mgr)

CTrackConfigManager *	GetConfigMgr ()

const CTrackConfigManager *	GetConfigMgr () const

void	SetTrackInitDone (bool f)

bool	IsTrackInitDone () const

void	SetAnnotLevel (int level)

int	GetAnnotLevel () const

void	SetAdaptive (bool flag)

bool	GetAdaptive () const

void	SetSkipGenuineCheck (bool flag)

bool	GetSkipGenuineCheck () const

virtual bool	IsOverlay () const

void	ToggleTracks (vector< string > &naAccessions)

void	LoadNATracks (CTempTrackProxy *t_proxy, const vector< string > &accessions)

void	LoadNATracks (CDataTrack *child, const vector< string > &naAccessions)

void	OnMenuToggleTrack (int index)

void	OnMenuTrackSettings (int index)

virtual void	ReinitNASubtracks (TAnnotMetaDataList &, bool)

void	InitNATracks (const TAnnotMetaDataList &annots, bool makeContainersVisible)

template<typename Tr >
void	Traverse (Tr &&tr, bool visible)

void	SyncSettings (TTrackProxies &dst_proxies, int level) const
	synchronize and merge track settings. More...

virtual void	SetTrack (CLayoutTrack *track, int order, bool shown=true)
	Replace the track by the given track order. More...

virtual void	CloneTrack (int order, const string &track_tile)
	Duplicate an existing track. More...

virtual void	RenameChildTrack (int order, const string &new_name)
	Rename a child track. More...

virtual void	RemoveTrack (int order, bool immediately=true)
	completely remove a track from the hierachical tree. More...

virtual void	CloseTrack (int order)
	Close a track. More...

virtual void	MoveUp (int order)
	move a track up by 1. More...

virtual void	MoveDown (int order)
	move a track down by 1. More...

virtual void	MoveTrackToTop (int order)
	move a track up by 1. More...

virtual void	MoveTrackToBottom (int order)
	move a track down by 1. More...

void	MoveTrack (int from, int to)

virtual bool	HasSubtracks () const
	Has any real subtracks. More...

virtual bool	NoSubtrackEver () const
	Will have no subtrack for ever. More...

void	OnSelectAll ()

void	OnDeselectAll ()

void	OnRevertSelection ()

void	OnMore ()

virtual void	OnToggleTrack (int order)

virtual void	OnTrackSettings (int order)

virtual CRef< CSGGenBankDS >	GetDataSource ()
	Method for accessing the data source. More...

virtual CConstRef< CSGGenBankDS >	GetDataSource () const

Public Member Functions inherited from CDataTrack
	CDataTrack (CRenderingContext *r_cntx)

virtual	~CDataTrack ()

void	OnAJNotification (CEvent *evt)
	event handlers for job notification event. More...

void	OnAJProgress (CEvent *evt)

void	SetVisRange (const TSeqRange &range)

Public Member Functions inherited from CGlyphContainer
	CGlyphContainer (CRenderingContext *r_cntx)

virtual	~CGlyphContainer ()

void	Add (CSeqGlyph *obj)
	Append a layout object to the end. More...

void	SetObjects (const CLayoutGroup::TObjectList &objs)

virtual void	SetComments (const string &comment_str)
	set comments. More...

virtual void	SetHighlights (const string &hl_str)
	set a list of 'object' need to be highlighted. More...

void	SetCommentGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetCommentGlyph ()

void	SetLabelGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetLabelGlyph ()

const THighlights &	GetHighlights () const

const TKeyHighlights &	GetHighlightsByKey () const

CLayoutGroup &	SetGroup ()

const CLayoutGroup &	GetGroup () const

CLayoutGroup::TObjectList &	SetChildren ()

const CLayoutGroup::TObjectList &	GetChildren () const

bool	Empty () const

void	SetLayoutPolicy (ILayoutPolicy *policy)
	Set policy on how to deploy the layout of its children. More...

virtual bool	Intersects (const TModelRect &rect, TConstObjects &objs) const
	Intersect testing. More...

virtual bool	Accept (IGlyphVisitor *visitor)
	Interface for accepting an IGlyphVisitor. More...

Public Member Functions inherited from CLayoutTrack
	CLayoutTrack (CRenderingContext *r_cntx)

virtual	~CLayoutTrack ()

void	LoadProfile (const string &profile_str)
	set track profile and load settings. More...

void	SaveProfile ()

void	SetProfile (const string &preset_style)
	CLayoutTrack inline method implmentation. More...

const string &	GetProfile () const

virtual string	GetFullTitle () const
	get a more meaningful title. More...

string	GetTitle () const
	get the track title. More...

const TTrackErrorStatus &	GetErrorStatus () const

void	SetErrorStatus (const TTrackErrorStatus &ErrorStatus)

bool	isInErrorStatus () const

bool	isRmtBased () const

bool	isRemotePath () const

virtual CHTMLActiveArea *	InitHTMLActiveArea (TAreaVector *p_areas) const
	Initialize the HTML active area for a track. More...

void	MouseOut ()

bool	OnMotion (const TModelPoint &pt)

bool	GetShowTitle () const

void	SetShowTitle (bool flag)

void	SetConfig (CRef< CSeqGraphicConfig > conf)

int	GetIndent () const

void	SetIndent (int indent)

void	SetMsg (const string &msg)

void	SetParentTrack (CLayoutTrack *parent)

CLayoutTrack *	GetParentTrack ()

const CLayoutTrack *	GetParentTrack () const

bool	IsOn () const

bool	IsExpanded () const

bool	IsMovable () const

bool	IsCollapsible () const

void	SetShow (bool shown)
	set the flag only. More...

void	SetExpanded (bool f)

void	SetShowFrame (bool show)

void	MoveTo (TModelUnit y)

void	SetTrackAttr (TTrackAttrFlags flags)

void	SetTitle (const string &label, const string &default_title=NcbiEmptyString)

void	SetIsBlast (bool isBlast)

void	SetHost (ILayoutTrackHost *host)

void	SetOrder (int order)

int	GetOrder () const

void	SetId (const string &id)

const string &	GetId () const

void	CloseMe ()
	close this track. More...

void	ShowMe ()

void	Expand (bool expand)
	Collapse or expand the track. More...

virtual bool	OnLeftDown (const TModelPoint &p)

virtual bool	OnLeftDblClick (const TModelPoint &p)

virtual bool	NeedTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Check if need to show tooltip. More...

virtual void	GetTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Get the tooltip if available. More...

Public Member Functions inherited from CSeqGlyph
	CSeqGlyph ()

virtual	~CSeqGlyph ()

virtual TSeqRange	GetRange (void) const
	get the total range of this object. More...

virtual bool	SetSelected (bool flag)
	Select or deselect this glyph. More...

virtual void	SetHideLabel (bool)
	Force to hide label. More...

virtual bool	HasSideLabel () const
	Query if there is label and label is on the side. More...

virtual bool	IsClickable () const
	Query if this glyph is clickable. More...

virtual bool	LessBySeqPos (const CSeqGlyph &obj) const
	compare this object to another based on glyph sequence position. More...

bool	LessByPos (const CSeqGlyph &obj) const
	compare this object to another, based on glyph geometry position. More...

bool	LessBySeqSize (const CSeqGlyph &obj) const
	compare this object to another, based on sequence size. More...

bool	LessBySize (const CSeqGlyph &obj) const
	compare this object to another, based on geometry size. More...

void	Draw () const
	render the layout. More...

TModelRect	GetModelRect () const
	get the bounding box. More...

bool	IsIn (const TModelPoint &p) const
	Hit test for points in PARENT COORD. More...

bool	IsIn (TModelUnit x, TModelUnit y) const

bool	IsInHor (TModelUnit x) const

void	SetRender (IGlyphRenderer *renderer)
	set customized renderer for this layout objects. More...

void	SetRenderingContext (CRenderingContext *context)
	Set the rendering context. More...

const CRenderingContext *	GetRenderingContext () const
	Get the rendering context. More...

void	SetTearline (size_t Tearline)
	tearline factor – used to limit a list of glyphs More...

size_t	GetTearline () const

void	SetTearlineText (const string &sTearlineText)
	tearline text – if set, is appended to the glyph name (does not naffect processing otherwise) More...

string	GetTearlineText () const

void	SetRowNum (size_t cur_row)

size_t	GetRowNum () const

void	SetVisible (size_t v)

size_t	GetVisible () const

int	GetLevel () const

void	SetLevel (int Level)

virtual string	GetPName () const
	persistent name of the glyph should not depend on the instance of the glyph, but should uniquely reflect its contents so two glyphs having the same contents will have the same name currently used to track isDrawn() status for expandable glyphs default implementation returns an empty string implementations exist for CFeatGlyph (name of the contained feature) and CLayoutGroup (concatenation of all sorted children names) More...

float	GetFadeFactor () const

virtual bool	OnLeftUp (const TModelPoint &)

virtual bool	OnContextMenu (wxContextMenuEvent &event)

bool	IsSelected () const

bool	IsHighlighted () const

CRgbaColor *	GetHighlightsColor () const

virtual TModelUnit	GetHeight () const

virtual TModelUnit	GetWidth () const

virtual TModelUnit	GetLeft () const

virtual TModelUnit	GetTop () const

virtual TModelUnit	GetRight () const

virtual TModelUnit	GetBottom () const

const TModelPoint &	GetPos () const

void	GetPosInWorld (TModelPoint &pos) const
	Get top left position in world coordinate. More...

const CSeqGlyph *	GetParent (void) const

CSeqGlyph *	GetParent (void)

ENeighbours	GetNeighbours () const

void	SetHighlighted (bool flag)

void	SetHighlightsColor (const CRgbaColor &hl_color)

void	SetHighlightsColor (const string &hl_color_str)

virtual void	SetWidth (TModelUnit w)

virtual void	SetHeight (TModelUnit h)

virtual void	SetLeft (TModelUnit l)

virtual void	SetTop (TModelUnit b)

virtual void	SetPos (const TModelPoint &upper_left)

void	SetParent (CSeqGlyph *p)

CSeqGlyph *	SetParent (void)

void	SetNeighbours (ENeighbours neighbours)

Public Member Functions inherited from CObjectEx
	CObjectEx (void)

virtual	~CObjectEx (void)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from CWeakObject
	CWeakObject (void)

virtual	~CWeakObject (void)

CPtrToObjectProxy *	GetPtrProxy (void) const
	Get pointer to proxy object containing pointer to this object. More...

Public Member Functions inherited from CEventHandler
	CEventHandler ()
	CEventHandler. More...

virtual	~CEventHandler ()

virtual void	AddListener (CEventHandler *listener, int pool_name=ePool_Default)
	Add a listener. More...

virtual void	RemoveListener (CEventHandler *listener)
	Remove a listener. More...

virtual void	RemoveAllListeners (void)

virtual bool	HasListener (CEventHandler *listener, int pool_name=ePool_Default) const
	returns "true" if the given listener belongs to the specified pool More...

virtual const TListeners *	GetListeners (int pool_name=ePool_Default) const
	returns a set of listeners fro the specified pool More...

virtual bool	OnEvent (CEvent *evt)
	Processes en event. Returns "true" if event has been processed. More...

virtual bool	Dispatch (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Dispatches an event to the listeners (but does not handle it). More...

virtual bool	Send (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Sends an event synchronously. More...

virtual bool	Send (CEvent *evt, int pool_name)

void	Post (CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Handles an event asynchronously (process and/or dispatch). More...

Public Member Functions inherited from ITrackContainer
virtual	~ITrackContainer ()

Public Member Functions inherited from ITrackInitObserver
virtual	~ITrackInitObserver ()

Protected Member Functions
virtual void	x_Draw () const
	The default renderer for this layout object. More...

void	x_InitNATracks (bool makeContainersVisible)

data track pure virtual methods.
virtual bool	x_IsJobNeeded (CAppJobDispatcher::TJobID id) const

virtual void	x_OnJobCompleted (CAppJobNotification &notify)

CLayoutTrack virtual methods
make sure we never collapse feature panel
virtual void	x_Expand (bool)
	Collapse or expand the track. More...

virtual void	x_LoadSettings (const string &preset_style, const TKeyValuePairs &settings)
	load the track settings. More...

virtual void	x_SaveSettings (const string &preset_style)
	save the track settings to a profile string. More...

virtual bool	x_Empty () const

virtual void	x_GetTBRect (TModelRect &rect) const
	Get title bar rectange exclude top margin. More...

virtual void	x_RenderTitleBar () const
	Method for rendering the track title bar. More...

virtual void	x_OnIconClicked (TIconID id)
	override method in CLayoutTrack to handle speical cases. More...

Protected Member Functions inherited from CTrackContainer
template<typename Tr >
void	x_Traverse (Tr &&tr, bool visible)

CRef< CTempTrackProxy >	x_GetMenuTrack (int index)

void	x_CreateTracksMenu (wxMenu &menu, TIconID id)

virtual void	x_OnAllJobsFinished ()
	actions to take on all job finished. More...

virtual void	x_ReinitSubtracks ()
	reinitialize all subtracks if necessary. More...

void	x_ReinitTrack (CTrackProxy *t_proxy)
	reinitialize a given subtrack More...

void	x_UpdateMsg ()
	udpate message in track title bar. More...

CTrackContainer *	x_ConvertToContainer (CTempTrackProxy *proxy)

virtual bool	x_ShowTitle () const
	Need to preserve title space and show the title. More...

void	x_ReinitNATrack (CTempTrackProxy *t_proxy, TAnnotMetaDataList &annots, bool makeContainersVisible)

void	x_MakeTopLevelTracks (CGlyphContainer *featurePanel, TTrackProxies &dst_proxies, int &order, const string &base_name, int indent)
	Make all the tracks at different levels as top-level tracks. More...

virtual void	x_UpdateData ()
	update track content. More...

Protected Member Functions inherited from CDataTrack
	DECLARE_EVENT_MAP ()

void	x_UpdateLayout ()

const TSeqRange &	x_GetVisRange () const

virtual void	x_OnJobFailed (CAppJobNotification &notify)

Protected Member Functions inherited from CGlyphContainer
virtual void	x_UpdateBoundingBox ()
	Update the bounding box assuming children's sizes are fixed if any. More...

virtual string	x_GetHistMsg () const
	Histogram configuration (linear, log, etc) is also on the title bar but multiple track types can have histograms, so we use virtual functinons. More...

virtual void	x_RenderContent () const
	The content rendering must be implemented in the derived layout tracks. More...

virtual void	x_ClearContent ()

Protected Member Functions inherited from CLayoutTrack
TModelUnit	x_GetTBHeight () const
	Get title bar height including margin. More...

CConstRef< CSeqGraphicConfig >	x_GetGlobalConfig () const
	Method for getting global configuration from rendering context. More...

void	x_OnLayoutChanged ()
	update the layout. More...

virtual void	x_RenderProgressBar () const
	Method for rendering the job loading or layout generating progress. More...

virtual void	x_RenderIcon (TIconID id, bool highlighted, bool lite_version=false) const
	Render track icons. More...

virtual int	x_GetIconState (TIconID id) const
	Get current status for a given button. More...

void	x_RegisterIcon (const SIconInfo &icon)
	register track icons. More...

void	x_DeregisterIcon (TIconID id)
	deregister an icon if already registered. More...

void	x_EnableIcon (TIconID id, bool enabled)
	Enable/disable an existing icon. More...

void	x_ShowIcon (TIconID id, bool shown)
	Show/hide an existing icon. More...

int	x_HitIconTest (const TModelPoint &p) const
	hit any icon?. More...

bool	x_HitTitleBar (const TModelPoint &p) const
	hit the title bar?. More...

void	x_SetStatus (const string &msg, int progress)

void	x_SetStartStatus ()

void	x_SetFinishStatus ()

bool	x_IsNCBITrack () const
	Indicates whether the track is NCBI track. More...

Protected Member Functions inherited from CSeqGlyph
virtual void	x_DrawHighlight () const

void	x_DrawInnerLabelColumns (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible) const

void	x_DrawInnerLabels (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > labels_ranges=nullptr, TSeqRange interval=nullptr, bool XOR_mode=false) const

void	x_DrawTruncatedLabel (const string &label, const CGlTextureFont &font, TModelUnit width, TModelUnit x, TModelUnit y, vector< TModelRange > *labels_ranges=nullptr) const

void	x_DrawException () const
	Draw a shading background to indicate exception. More...

void	x_Parent2Local (TModelPoint &pnt) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelUnit &, TModelUnit &y) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelRect &rect) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_World2Local (TModelPoint &p) const
	Transform the coordiante from world coord. to local coord. More...

void	x_World2Local (TModelUnit &x, TModelUnit &y) const

void	x_Local2World (TModelPoint &p) const
	Transform the coordiantes from local coord. to world coord. More...

void	x_Local2World (TModelUnit &x, TModelUnit &y) const

void	x_InitHTMLActiveArea (CHTMLActiveArea &area) const
	initialize the basic information for a given active area. More...

bool	x_Visible_V () const
	is this glyph visible in vertical direction? More...

template<class T >
bool	x_IntersectVisible (const CRange< T > &SeqRange, T &from, T &to) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Member Functions inherited from CWeakObject
void	CleanWeakRefs (void) const
	Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...

Protected Member Functions inherited from CEventHandler
virtual const SEvtMap *	GetEventMap () const

void	x_DeclareDead ()
	Removes itself unavailable for async event delivery. More...

void	x_AddListenerToPool (CEventHandler *listener, int pool_name)

Protected Attributes
CIRef< ISGDataSourceContext >	m_DSContext

SConstScopedObject	m_InputObj

Protected Attributes inherited from CTrackContainer
CRef< CFeaturePanelDS >	m_DS

TTrackProxies	m_TrackProxies
	all the tracks including on and off. More...

Protected Attributes inherited from CGlyphContainer
CLayoutGroup	m_Group

CRef< CSimpleLayout >	m_Simple

CRef< CInlineLayout >	m_Inline

CRef< CLayeredLayout >	m_Layered

Protected Attributes inherited from CLayoutTrack
int	m_Order
	track order number More...

string	m_Id
	track identifier More...

bool	m_On
	is this track shown More...

bool	m_ShowFrame
	need to draw frame, not title More...

bool	m_Expanded
	is this track in expanded state More...

TIcons	m_Icons
	registered icon info More...

int	m_HighlightedIcon
	the highlighted icon index More...

TTrackAttrFlags	m_Attrs
	various track attributes More...

ILayoutTrackHost *	m_LTHost
	Top level host owning the tracks. More...

string	m_Title
	track title More...

bool	m_isBlast {false}
	true if the track is known to be generated and uploaded by BLAST More...

string	m_DefaultTitle
	Default track title. More...

string	m_Msg
	special message need to show on title bar More...

int	m_Progress
	any job progress index (0 - 100) More...

int	m_IndentLevel
	track hierachy indentation level. More...

TTrackErrorStatus	m_ErrorStatus

CRef< CSeqGraphicConfig >	m_gConfig
	global configuration. More...

string	m_Profile = "Default"
	track setting profile More...

Protected Attributes inherited from CSeqGlyph
CSeqGlyph *	m_Parent
	parent/child relationships for this feature More...

CRenderingContext *	m_Context
	the rendering context More...

unique_ptr< CRgbaColor >	m_HighlightsColor
	Highlight color. More...

ENeighbours	m_Neighbours
	Indicates whether the glyph has neighbours. More...

Protected Attributes inherited from CEventHandler
TPools	m_Pools

Private Types
enum	EFeatPanelIconID { eIcon_Color = eIcon_MaxTrackIconID + 1 , eIcon_Size , eIcon_Decoration , eIcon_Label }

typedef int	TLevel

typedef vector< TLevel >	TDisplayLevels

Private Member Functions
void	x_OnLayoutIconClicked ()

void	x_OnColorIconClicked ()

void	x_OnSizeIconClicked ()

void	x_OnDecorationIconClicked ()

void	x_OnLabelIconClicked ()

void	x_ConfigureTracks (bool makeContainersVisible=false)
	reset the track status to be ready for reconfiguring layout tracks. More...

void	x_ConfigureSubtracks_Recursive (CTrackContainer *parent, const TTrackProxies &proxies, int level)
	Create all the exsiting layout tracks. More...

CTrackContainer *	x_ConfigureSubtracks (CTrackContainer parent, const CTrackProxy param, int level, const set< string > &usedFeatureSubkeys)

void	x_LoadSettings ()
	Load settings for feature panel. More...

void	x_SaveSettings ()
	Save settings for feature panel. More...

void	x_InitTrackIcons ()

void	x_RenderHairLineSelections () const

bool	x_DrawHairLine (int opt, size_t total, const multiset< TSeqPos > &all_pos, TSeqPos pos, TModelUnit line_y) const

void	x_RenderFeatureGrid () const

double	x_CalcGridStep (double base_step, double min_step, double max_step) const

bool	x_GetShowDisplayLevel (TLevel level) const
	Only meaningful if Multilevel is true. More...

void	x_SetShowDisplayLevel (TLevel level, bool show)

CRef< CTrackContainer >	x_CreateLevelTrack (int level, int id, const string &track_name, bool shown)
	create track container for a given annotation level. More...

bool	x_NeedSpecialGrid () const
	need show special grid for the selected cds features. More...

void	x_StartAssemblyJob ()

void	x_OnAssemblyLoaded (const list< CRef< objects::CGC_Assembly > > &assemblies)

Private Attributes
CRef< CExternalLayoutTrack >	m_ExtLayoutTrack

TTrackProxies	m_TrackSettings
	initial track layout settings. More...

const TSelectedGlyphs *	m_SelFeatures

const TSelectedGlyphs *	m_SelCDSFeatures

CRegularGridGen	m_Gen
	graphical grid. More...

CRegularGridRenderer	m_Grid

bool	m_IsMultiLevel

TDisplayLevels	m_DisplayLevels

bool	m_IconTexInitialized
	flag indicating whether icon textures have been created. More...

bool	m_CgiMode
	special flag indicating if it is in cgi mode. More...

TImageInfo *	m_ImageInfo
	Information about image that can be returned to client. More...

string	m_ConfigKey
	Base regitry key for panel setting and tracks default "GBPlugins.SeqGraphicFeatPanel" is for SV MSA sets its own "GBPlugins.MSAFeatPanel" to separate MSA and SV tracks. More...

bool	m_DiscoverTracks = true

TAnnotMetaDataList	m_NAData

bool	m_AssemblyLoaded

vector< CRef< objects::CGC_Assembly > >	m_Assemblies

string	m_DefaultAssembly

string	m_search_text

bool	m_search_match_case = false

size_t	m_next_result = 0

vector< CMappedFeatOrObject >	m_search_results

IServiceLocator *	m_ServiceLocator = 0

Static Private Attributes
static CTrackTypeInfo	m_TypeInfo

Friends
class	CConfigureTracksDlg

Additional Inherited Members
Static Public Member Functions inherited from CLayoutTrack
static void	RegisterIconImage (const TIconAlias &key, const string &img_file)
	register the image for an icon. More...

Static Public Member Functions inherited from CSeqGlyph
static bool	PointInRect (const TModelPoint &p, const TModelRect &rc)

static bool	PointInRect (TModelUnit x, TModelUnit y, const TModelRect &rc)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Member Functions inherited from CEventHandler
static bool	HandlePostRequest ()

static void	ClearPostQueue ()
	erases all events from the queue More...

static void	DestroyPostQueue ()

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Types inherited from CLayoutTrack
enum	EIconID { eIcon_Close = 0 , eIcon_Expand , eIcon_Content , eIcon_Layout , eIcon_Settings , eIcon_Help , eIcon_MaxTrackIconID = 100 }
	Icon id used in layout track. More...

typedef int	TIconID
	use int as TIconID instead of EIconID. More...

typedef string	TIconAlias
	the icon alias used as a key More...

typedef vector< SIconInfo >	TIcons

Static Protected Member Functions inherited from CLayoutTrack
static void	RegisterCommonIconImages ()
	register images for the common icons. More...

static bool	InitIconTextures ()
	initialize OpenGL ttexture objects for icons. More...

Static Protected Attributes inherited from CEventHandler
static const SEvtMap	sm_EvtMap

Detailed Description

Definition at line 64 of file feature_panel.hpp.

Member Typedef Documentation

◆ TDisplayLevels

typedef vector<TLevel> CFeaturePanel::TDisplayLevels

private

Definition at line 215 of file feature_panel.hpp.

◆ TImageInfo

typedef CSeqGraphicImageInfo CFeaturePanel::TImageInfo

Definition at line 75 of file feature_panel.hpp.

◆ TLevel

typedef int CFeaturePanel::TLevel

private

Definition at line 214 of file feature_panel.hpp.

◆ TSelectedGlyphs

typedef list< CWeakRef<CSeqGlyph> > CFeaturePanel::TSelectedGlyphs

Definition at line 74 of file feature_panel.hpp.

◆ TTrackSettings

typedef map< string, string > CFeaturePanel::TTrackSettings

key-value pair for track settings

Definition at line 72 of file feature_panel.hpp.

◆ TTrackSettingsSet

typedef list< TTrackSettings > CFeaturePanel::TTrackSettingsSet

Definition at line 73 of file feature_panel.hpp.

Member Enumeration Documentation

◆ EFeatPanelIconID

enum CFeaturePanel::EFeatPanelIconID

private

Enumerator
eIcon_Color	color theme
eIcon_Size	size level
eIcon_Decoration	feature decoration
eIcon_Label	feature label position

Definition at line 168 of file feature_panel.hpp.

Constructor & Destructor Documentation

◆ CFeaturePanel()

CFeaturePanel::CFeaturePanel	(	CRenderingContext *	r_cntx,
		bool	cgi_mode
	)

Definition at line 114 of file feature_panel.cpp.

References eIcon_Color, CLayoutTrack::eIcon_Content, eIcon_Decoration, eIcon_Label, CLayoutTrack::eIcon_Layout, eIcon_Size, CRegularGridRenderer::EnableIntegerCentering(), CRegularGridGen::EnableMinusOneBased(), CLayoutTrack::fFrameVisible, CLayoutTrack::fFullTrack, CLayoutTrack::fShowAlways, CLayoutTrack::fShowIcons, CTrackTypeInfo::GetDescr(), m_Gen, m_Grid, CLayoutTrack::m_IndentLevel, CGlyphContainer::m_Simple, m_TypeInfo, CRegularGridGen::SetAutoStepUpdate(), CRegularGridGen::SetIntegerMode(), CGlyphContainer::SetLayoutPolicy(), CSeqGlyph::SetLeft(), CLayoutTrack::SetTitle(), CSeqGlyph::SetTop(), CSimpleLayout::SetTopMargin(), CLayoutTrack::SetTrackAttr(), CSimpleLayout::SetVertSpace(), CLayoutTrack::x_DeregisterIcon(), x_InitTrackIcons(), and CLayoutTrack::x_RegisterIcon().

◆ ~CFeaturePanel()

CFeaturePanel::~CFeaturePanel ( )

virtual

Definition at line 171 of file feature_panel.cpp.

References CTrackContainer::DeleteAllJobs(), m_CgiMode, CTrackContainer::m_DS, and SaveTrackConfig().

Member Function Documentation

◆ AssemblyLoaded()

bool CFeaturePanel::AssemblyLoaded ( ) const

inline

Definition at line 283 of file feature_panel.hpp.

References m_AssemblyLoaded.

◆ ConfigureTracks()

void CFeaturePanel::ConfigureTracks ( )

Definition at line 426 of file feature_panel.cpp.

References map_checker< Container >::empty(), m_CgiMode, m_DiscoverTracks, CTrackContainer::m_DS, m_NAData, m_TrackSettings, CRef< C, Locker >::NotNull(), CTrackContainer::SetTrackInitDone(), x_ConfigureTracks(), x_LoadSettings(), CLayoutTrack::x_OnLayoutChanged(), and x_StartAssemblyJob().

Referenced by CSeqGraphicRenderer::ConfigureTracks(), CAlnVecRow::ConfigureTracks(), CAlnVecRow::Expand(), CAlnVecRow::GetTrackCount(), and SetAssembly().

◆ FindText()

CMappedFeatOrObject CFeaturePanel::FindText	(	const string &	text,
		bool	match_case
	)

Definition at line 385 of file feature_panel.cpp.

References _, _ASSERT, NSearchFeatPanel::GatherFeatures(), CSGGenBankDS::GetBioseqHandle(), CSGGenBankDS::GetScope(), IServiceLocator::GetServiceByType(), kEmptyStr, CTrackContainer::m_DS, m_next_result, m_search_match_case, m_search_results, m_search_text, m_ServiceLocator, ResetSearch(), str(), text(), and wxT.

Referenced by CSeqGraphicPane::FindText().

◆ GetAnnotNames()

set< string > CFeaturePanel::GetAnnotNames ( )

Definition at line 418 of file feature_panel.cpp.

References NSearchFeatPanel::CTrackFeatSubtype::GetAnnotsSnp(), and CTrackContainer::Traverse().

◆ GetAssemblies()

const vector<CRef<objects::CGC_Assembly> >& CFeaturePanel::GetAssemblies ( void ) const

inline

Definition at line 284 of file feature_panel.hpp.

References m_Assemblies.

◆ GetCurrentAssembly()

string CFeaturePanel::GetCurrentAssembly ( ) const

Definition at line 319 of file feature_panel.cpp.

References CFeaturePanelDS::GetAssembly(), and CTrackContainer::m_DS.

◆ GetTypeInfo()

const CTrackTypeInfo & CFeaturePanel::GetTypeInfo ( void ) const

virtual

Reimplemented from CTrackContainer.

Definition at line 632 of file feature_panel.cpp.

References m_TypeInfo.

◆ HitTest()

CRef< CSeqGlyph > CFeaturePanel::HitTest ( const TModelPoint & p )

virtual

Hit testing.

Test whether a given point in PARENT's COORD. SYSTEM falls inside this layout object. Recursive hit testing may happen if this layout object is a container of other layout objects.

Returns: the object that gets hit.

Reimplemented from CGlyphContainer.

Definition at line 266 of file feature_panel.cpp.

References CGlyphContainer::HitTest(), CRef< C, Locker >::Reset(), and CLayoutTrack::x_HitTitleBar().

Referenced by CSeqGraphicRenderer::HitTest(), and CAlnVecRow::x_HitTest().

◆ HitTestHor()

bool CFeaturePanel::HitTestHor	(	TSeqPos	x,
		const CObject *	obj
	)

virtual

Reimplemented from CGlyphContainer.

Definition at line 278 of file feature_panel.cpp.

References CGlyphContainer::HitTestHor().

◆ LoadDefaultTracks()

void CFeaturePanel::LoadDefaultTracks ( )

Reset tracks to the original default track list.

Resetting completely wipes out current track list and user settings.

Definition at line 581 of file feature_panel.cpp.

References CSGConfigUtils::DefTrackProfile(), CRegistryWriteView::DeleteField(), CGuiRegistry::GetInstance(), CLayoutTrack::GetProfile(), ITERATE, CGuiRegistry::kDecimalDot, m_ConfigKey, CLayoutTrack::m_gConfig, registry, CSeqGraphicConfig::SetDirty(), CLayoutTrack::SetProfile(), CSeqGraphicConfig::SetTrackProfile(), CSGConfigUtils::TrackProfileKey(), x_ConfigureTracks(), and x_LoadSettings().

Referenced by CAlnVecRow::LoadDefaultTracks(), and CSeqGraphicRenderer::LoadDefaultTracks().

◆ OnDataChanged()

void CFeaturePanel::OnDataChanged ( )

Definition at line 558 of file feature_panel.cpp.

References CTrackContainer::Traverse(), and x_ConfigureTracks().

Referenced by CSeqGraphicRenderer::OnDataChanged().

◆ OnDataChanging()

void CFeaturePanel::OnDataChanging ( )

Definition at line 496 of file feature_panel.cpp.

References CTrackContainer::ClearTracks(), CFeaturePanelDS::DeleteMetaDataJob(), CTrackContainer::m_DS, and Update().

Referenced by CSeqGraphicRenderer::OnDataChanging().

◆ OnTrackInitFinished()

void CFeaturePanel::OnTrackInitFinished ( const CLayoutTrack * sender )

virtual

Implements ITrackInitObserver.

Definition at line 638 of file feature_panel.cpp.

References CTrackContainer::GetAnnotLevel(), CRenderingContext::GetVisSeqRange(), CTrackContainer::IsTrackInitDone(), CSeqGlyph::m_Context, m_IsMultiLevel, CTrackContainer::m_TrackProxies, NON_CONST_ITERATE, CTrackProxy::STPSorterByOrder::s_CompareCRefs(), CDataTrack::Update(), and CGlyphContainer::x_UpdateBoundingBox().

◆ ResetSearch()

void CFeaturePanel::ResetSearch ( )

virtual

Reimplemented from CTrackContainer.

Definition at line 373 of file feature_panel.cpp.

References IServiceLocator::GetServiceByType(), kEmptyStr, m_next_result, m_search_results, m_search_text, and m_ServiceLocator.

Referenced by FindText(), and CSeqGraphicPane::ResetSearch().

◆ SaveTrackConfig()

void CFeaturePanel::SaveTrackConfig ( )

Definition at line 614 of file feature_panel.cpp.

References CTrackContainer::Traverse().

Referenced by CSeqGraphicPane::OnKillFocus(), CAlnVecRow::SaveTrackConfig(), CSeqGraphicRenderer::SaveTrackConfig(), CAlnVecRow::x_ResetTrackPanel(), and ~CFeaturePanel().

◆ SetAssembly()

void CFeaturePanel::SetAssembly ( const string & assembly )

Definition at line 309 of file feature_panel.cpp.

References map_checker< Container >::clear(), ConfigureTracks(), CFeaturePanelDS::GetAssembly(), CTrackContainer::m_DS, m_NAData, and CFeaturePanelDS::SetAssembly().

Referenced by CSeqGraphicWidget::x_SaveVectorImage().

◆ SetConfigKey()

void CFeaturePanel::SetConfigKey ( const string & config_key )

inline

Definition at line 320 of file feature_panel.hpp.

References _ASSERT, and m_ConfigKey.

Referenced by CAlnVecRow::x_CreateTrackPanel().

◆ SetDefaultAssembly()

void CFeaturePanel::SetDefaultAssembly ( const string & defaultAssembly )

inline

Definition at line 282 of file feature_panel.hpp.

References m_DefaultAssembly.

◆ SetDiscoverTracks()

void CFeaturePanel::SetDiscoverTracks ( bool value = true )

inline

Definition at line 333 of file feature_panel.hpp.

References m_DiscoverTracks, and rapidjson::value.

◆ SetDSContext()

void CFeaturePanel::SetDSContext ( ISGDataSourceContext * ds_ctx )

inline

Definition at line 296 of file feature_panel.hpp.

References m_DSContext, and CRef< C, Locker >::Reset().

Referenced by CSeqGraphicRenderer::SetDSContext(), and CAlnVecRow::x_CreateTrackPanel().

◆ SetExternalGlyphs()

void CFeaturePanel::SetExternalGlyphs ( const CSeqGlyph::TObjects & objs )

Definition at line 566 of file feature_panel.cpp.

References CSeqGlyph::m_Context, m_ExtLayoutTrack, CRef< C, Locker >::Reset(), CGlyphContainer::SetGroup(), CGlyphContainer::SetObjects(), CLayoutTrack::SetTitle(), CTrackContainer::SetTrack(), CGlyphContainer::Update(), and CLayoutGroup::UpdateLayout().

Referenced by CSeqGraphicRenderer::SetExternalGlyphs().

◆ SetImageInfo()

void CFeaturePanel::SetImageInfo ( TImageInfo * info )

inline

Optional image info structure to return data to (cgi) caller.

Definition at line 106 of file feature_panel.hpp.

References info, and m_ImageInfo.

Referenced by CSeqGraphicRenderer::x_Draw(), and CSeqGraphicRenderer::x_DrawVectorGraphics().

◆ SetInputObject()

void CFeaturePanel::SetInputObject ( SConstScopedObject & obj )

Definition at line 283 of file feature_panel.cpp.

References IRegistry::GetBool(), CNcbiApplicationAPI::GetConfig(), CRef< C, Locker >::GetPointer(), CNcbiApplication::Instance(), CSeqGlyph::m_Context, CTrackContainer::m_DS, m_DSContext, m_InputObj, CRef< C, Locker >::Reset(), CFeaturePanelDS::SetDSContext(), CSGGenBankDS::SetJobListener(), CFeaturePanelDS::SetRenderingContext(), CFeaturePanelDS::SetTMSContext(), and CFeaturePanelDS::SetUseEUtils().

Referenced by CSeqGraphicRenderer::SetInputObject(), and CAlnVecRow::x_CreateTrackPanel().

◆ SetNonAsnInput()

void CFeaturePanel::SetNonAsnInput ( const INonAsnTrackData & data )

Definition at line 300 of file feature_panel.cpp.

References CTrackContainer::AddNewTrack(), data, and CTempTrackProxy::SetCategory().

Referenced by CSeqGraphicRenderer::SetNonAsnInput().

◆ SetSelectedCDSFeats()

void CFeaturePanel::SetSelectedCDSFeats ( const TSelectedGlyphs & cds_feats )

inline

Definition at line 304 of file feature_panel.hpp.

References m_SelCDSFeatures.

Referenced by CSeqGraphicRenderer::CSeqGraphicRenderer().

◆ SetSelectedFeats()

void CFeaturePanel::SetSelectedFeats ( const TSelectedGlyphs & feats )

inline

Definition at line 300 of file feature_panel.hpp.

References m_SelFeatures.

Referenced by CSeqGraphicRenderer::CSeqGraphicRenderer().

◆ SetServiceLocator()

void CFeaturePanel::SetServiceLocator ( IServiceLocator * s )

inline

Definition at line 103 of file feature_panel.hpp.

References m_ServiceLocator.

◆ SetTrackConfig() [1/2]

void CFeaturePanel::SetTrackConfig ( const TTrackProxies & track_settings )

inline

Definition at line 327 of file feature_panel.hpp.

References m_TrackSettings.

◆ SetTrackConfig() [2/2]

void CFeaturePanel::SetTrackConfig ( const TTrackSettingsSet & settings_set )

Definition at line 608 of file feature_panel.cpp.

References CTrackContainer::GetConfigMgr(), m_TrackSettings, and CTrackConfigManager::SetTrackConfig().

Referenced by CAlnVecRow::ConfigureTracks(), CSeqGraphicRenderer::SetTrackConfig(), and CAlnVecRow::x_CreateTrackPanel().

◆ ShowConfigureTracksDlg()

void CFeaturePanel::ShowConfigureTracksDlg ( const string & category )

Definition at line 345 of file feature_panel.cpp.

References CTrackContainer::IsTrackInitDone(), NULL, CConfigureTracksDlg::SetCategory(), CDialog::SetRegistryPath(), CTrackContainer::Traverse(), and wxT.

Referenced by CAlnVecRow::ConfigureTracksDialog(), and CSeqGraphicPane::LTH_ConfigureTracksDlg().

◆ ShowTrack()

void CFeaturePanel::ShowTrack ( const string & track_key )

Turn on an existing track.

Definition at line 620 of file feature_panel.cpp.

References CTempTrackProxy::GetKey(), m_TrackSettings, and CTempTrackProxy::SetShown().

Referenced by CSeqGraphicRenderer::ShowTrack().

◆ SkipGenuineCheck()

void CFeaturePanel::SkipGenuineCheck ( )

inline

skip track existence verification.

Assume tracks exist.

Definition at line 312 of file feature_panel.hpp.

References CTrackContainer::SetSkipGenuineCheck().

Referenced by CSeqGraphicRenderer::SkipGenuineCheck().

◆ Update()

void CFeaturePanel::Update ( bool )

virtual

Update content and layout including the bounding box.

Parameters

layout_only if true only update the layout not the content. May need to update the layout only under certain situation, e.g. selection. The update is recursive if this is a container layout. By default, it updates the bounding box only.

Reimplemented from CDataTrack.

Definition at line 180 of file feature_panel.cpp.

References CTrackContainer::GetAnnotLevel(), CRenderingContext::GetVisSeqRange(), CTrackContainer::IsTrackInitDone(), m_CgiMode, CSeqGlyph::m_Context, CLayoutTrack::m_IndentLevel, m_IsMultiLevel, CTrackContainer::m_TrackProxies, NON_CONST_ITERATE, CTrackProxy::STPSorterByOrder::s_CompareCRefs(), CGlyphContainer::SetChildren(), CLayoutTrack::SetMsg(), CTrackContainer::SetSubtrackProxies(), CDataTrack::Update(), CSeqGlyph::Update(), CTrackContainer::x_MakeTopLevelTracks(), CTrackContainer::x_ReinitSubtracks(), CTrackContainer::x_UpdateData(), CDataTrack::x_UpdateLayout(), and CTrackContainer::x_UpdateMsg().

Referenced by CAlnVecRow::LTH_OnLayoutChanged(), OnDataChanging(), CSeqGraphicRenderer::UpdateData(), CSeqGraphicRenderer::UpdateVectorLayout(), x_ConfigureTracks(), CAlnVecRow::x_CreateTrackPanel(), CSeqGraphicRenderer::x_Draw(), CSeqGraphicRenderer::x_DrawVectorGraphics(), CAlnVecRow::x_HitTest(), x_OnColorIconClicked(), x_OnDecorationIconClicked(), x_OnLabelIconClicked(), x_OnSizeIconClicked(), CAlnVecRow::x_RenderTracks(), and CAlnVecRow::x_UpdateRowHeight().

◆ UpdateGridStep()

void CFeaturePanel::UpdateGridStep ( int step )

inline

Definition at line 308 of file feature_panel.hpp.

References m_Gen, and CRegularGridGen::SetStep().

Referenced by CSeqGraphicRenderer::x_Draw(), and CSeqGraphicRenderer::x_DrawVectorGraphics().

◆ x_CalcGridStep()

double CFeaturePanel::x_CalcGridStep	(	double	base_step,
		double	min_step,
		double	max_step
	)		const

private

Definition at line 1777 of file feature_panel.cpp.

References kSteps, log10(), M, and P.

Referenced by x_RenderFeatureGrid().

◆ x_ConfigureSubtracks()

CTrackContainer * CFeaturePanel::x_ConfigureSubtracks	(	CTrackContainer *	parent,
		const CTrackProxy *	param,
		int	level,
		const set< string > &	usedFeatureSubkeys
	)

private

Definition at line 1261 of file feature_panel.cpp.

References CTrackContainer::AddTrackProxy(), CTrackContainer::AddTracks(), map_checker< Container >::begin(), ILayoutTrackFactory::CreateTracks(), depth, map_checker< Container >::empty(), CTrackContainer::GetAdaptive(), CTrackContainer::GetAnnotLevel(), CTrackContainer::GetConfigMgr(), CTempTrackProxy::GetKey(), CTrackContainer::GetSkipGenuineCheck(), CTrackConfigManager::GetTrackFactory(), m_CgiMode, CSeqGlyph::m_Context, m_DSContext, m_InputObj, ILayoutTrackFactory::SExtraParams::m_RemotePath, ILayoutTrackFactory::SExtraParams::m_SkipGenuineCheck, ILayoutTrackFactory::SExtraParams::m_SubTracks, ILayoutTrackFactory::SExtraParams::m_UsedFeatureSubkeys, ILayoutTrackFactory::NeedBackgroundInit(), NULL, CRef< C, Locker >::Reset(), CTrackContainer::SetConfigMgr(), CTrackContainer::SetSubtrackProxies(), and ILayoutTrackFactory::UnderstandLevel().

Referenced by x_ConfigureSubtracks_Recursive().

◆ x_ConfigureSubtracks_Recursive()

void CFeaturePanel::x_ConfigureSubtracks_Recursive	(	CTrackContainer *	parent,
		const TTrackProxies &	proxies,
		int	level
	)

private

Create all the exsiting layout tracks.

Parameters

group the container into which the created tracks will be added.

level the feature retrieving level used for annotation selector. There are twofold meanings here. If level >=0, then those tracks with concept of level will be initialized with that exact level, all other tracks without level concept won't be initialized. If level == -1, all registered tracks will be initialized. For those tracks with level concept will use adpative annotation selector. if level == -2, only those tracks without level concept will be initialized.

Definition at line 1237 of file feature_panel.cpp.

References CTempTrackProxy::GetChildren(), CTrackConfigManager::GetUsedFeatureKeys(), ITERATE, m_TrackSettings, and x_ConfigureSubtracks().

Referenced by x_ConfigureTracks().

◆ x_ConfigureTracks()

void CFeaturePanel::x_ConfigureTracks ( bool makeContainersVisible = false )

private

reset the track status to be ready for reconfiguring layout tracks.

Definition at line 1162 of file feature_panel.cpp.

References CTrackContainer::ClearTracks(), CSeqGraphicConfig::eDepth_nolimit, CSeqGraphicConfig::eDepth_unknown, map_checker< Container >::empty(), CSGGenBankDS::GetBioseqHandle(), NStr::IntToString(), ITERATE, kLevelTrackBaseID, kMaxDisplayLevel, m_DisplayLevels, CTrackContainer::m_DS, CLayoutTrack::m_gConfig, m_IsMultiLevel, m_NAData, CTrackContainer::m_TrackProxies, m_TrackSettings, CTrackContainer::SetAdaptive(), CTrackContainer::SetAnnotLevel(), Update(), x_ConfigureSubtracks_Recursive(), x_CreateLevelTrack(), and x_InitNATracks().

Referenced by ConfigureTracks(), LoadDefaultTracks(), OnDataChanged(), and x_OnLayoutIconClicked().

◆ x_CreateLevelTrack()

CRef< CTrackContainer > CFeaturePanel::x_CreateLevelTrack	(	int	level,
		int	id,
		const string &	track_name,
		bool	shown
	)

private

create track container for a given annotation level.

This will be used only in multiple level layout mode.

Definition at line 1846 of file feature_panel.cpp.

References CTrackContainer::AddTracks(), map_checker< Container >::begin(), ILayoutTrackFactory::CreateTracks(), CTrackContainer::GetConfigMgr(), CTrackTypeInfo::GetId(), CTrackContainer::GetSkipGenuineCheck(), CTrackConfigManager::GetTrackFactory(), CTrackContainerFactory::GetTypeInfo(), CSeqGlyph::m_Context, m_DSContext, m_InputObj, ILayoutTrackFactory::SExtraParams::m_SkipGenuineCheck, and NULL.

Referenced by x_ConfigureTracks().

◆ x_Draw()

void CFeaturePanel::x_Draw ( ) const

protectedvirtual

The default renderer for this layout object.

Reimplemented from CLayoutTrack.

Definition at line 673 of file feature_panel.cpp.

◆ x_DrawHairLine()

bool CFeaturePanel::x_DrawHairLine	(	int	opt,
		size_t	total,
		const multiset< TSeqPos > &	all_pos,
		TSeqPos	pos,
		TModelUnit	line_y
	)		const

private

◆ x_Empty()

bool CFeaturePanel::x_Empty ( ) const

protectedvirtual

Reimplemented from CTrackContainer.

Definition at line 805 of file feature_panel.cpp.

References CGlyphContainer::GetChildren().

◆ x_Expand()

virtual void CFeaturePanel::x_Expand ( bool expand )

inlineprotectedvirtual

Collapse or expand the track.

Parameters

expand true to expand the track, false to collapse it.

Reimplemented from CDataTrack.

Definition at line 157 of file feature_panel.hpp.

◆ x_GetShowDisplayLevel()

bool CFeaturePanel::x_GetShowDisplayLevel ( TLevel level ) const

private

Only meaningful if Multilevel is true.

Definition at line 1827 of file feature_panel.cpp.

References m_DisplayLevels.

◆ x_GetTBRect()

void CFeaturePanel::x_GetTBRect ( TModelRect & rc ) const

protectedvirtual

Get title bar rectange exclude top margin.

The tracks may need to override this method if the title bar is not standard one which is on the top.

Reimplemented from CLayoutTrack.

Definition at line 829 of file feature_panel.cpp.

References CGlRect< T >::Bottom(), CRenderingContext::GetGlPane(), CSeqGraphicConfig::GetIconSize(), CRenderingContext::GetVisibleFrom(), CGlPane::GetVisibleRect(), CRenderingContext::GetVisibleTo(), CGlRect< T >::Init(), CRenderingContext::IsHorizontal(), CGlRect< T >::Left(), CSeqGlyph::m_Context, CLayoutTrack::m_gConfig, CLayoutTrack::m_Icons, and CRenderingContext::ScreenToSeq().

Referenced by x_Draw(), and x_RenderTitleBar().

◆ x_InitNATracks()

void CFeaturePanel::x_InitNATracks ( bool makeContainersVisible )

protected

Definition at line 792 of file feature_panel.cpp.

References i, CTrackContainer::InitNATracks(), m_IsMultiLevel, m_NAData, and CTrackContainer::m_TrackProxies.

Referenced by x_ConfigureTracks(), and x_OnJobCompleted().

◆ x_InitTrackIcons()

void CFeaturePanel::x_InitTrackIcons ( )

private

Definition at line 1534 of file feature_panel.cpp.

References CTrackContainer::GetConfigMgr(), ITERATE, m_CgiMode, CLayoutTrack::RegisterCommonIconImages(), CLayoutTrack::RegisterIconImage(), and IIconProvider::RegisterIconImages().

Referenced by CFeaturePanel().

◆ x_IsJobNeeded()

bool CFeaturePanel::x_IsJobNeeded ( CAppJobDispatcher::TJobID id ) const

protectedvirtual

Reimplemented from CDataTrack.

Definition at line 758 of file feature_panel.cpp.

References CSGGenBankDS::IsJobNeeded(), CFeaturePanelDS::IsMetaDataJob(), and CTrackContainer::m_DS.

◆ x_LoadSettings() [1/2]

void CFeaturePanel::x_LoadSettings ( )

private

Load settings for feature panel.

Definition at line 1359 of file feature_panel.cpp.

References CSGConfigUtils::DefLayout(), CSGConfigUtils::DefTrackProfile(), CUser_field_Base::C_Data::e_Ints, CUser_field_Base::C_Data::e_Str, eIcon_Color, CLayoutTrack::eIcon_Content, eIcon_Decoration, CLayoutTrack::eIcon_Help, eIcon_Label, CLayoutTrack::eIcon_Layout, eIcon_Size, set< Key, Compare >::empty(), Error(), f, NStr::fSplit_Tokenize, CRegistryReadView::GetBool(), CRegistryReadView::GetField(), CSeqGraphicConfig::GetHorizontalGridColor(), CGuiRegistry::GetInstance(), CSeqGraphicConfig::GetLayout(), CException::GetMsg(), CLayoutTrack::GetProfile(), CSGConfigUtils::GetReadView(), CSeqGraphicConfig::GetShowHorzGrid(), CRegistryReadView::GetString(), CSeqGraphicConfig::GetVerticalGridColor(), info, set< Key, Compare >::insert(), ITERATE, k_display_level, k_multi_level, CGuiRegistry::kDecimalDot, CSGConfigUtils::LayoutKey(), CTempTrackProxy::LoadFromRegistry(), LOG_POST, m_ConfigKey, m_DisplayLevels, m_Grid, CLayoutTrack::m_Icons, m_IsMultiLevel, m_TrackSettings, registry, remove_if(), s_StabilizeBaseContainers(), CRegularGridRenderer::SetHorzColor(), CRegularGridRenderer::SetShowHorzGrid(), CRegularGridRenderer::SetShowVertGrid(), CRegularGridRenderer::SetVertColor(), NStr::Split(), NStr::StartsWith(), str(), NStr::StringToInt(), NStr::ToLower(), CSGConfigUtils::TrackProfileKey(), NStr::TruncateSpacesInPlace(), CSGConfigUtils::UserSettingPrefix(), CLayoutTrack::x_GetGlobalConfig(), and x_SetShowDisplayLevel().

Referenced by ConfigureTracks(), LoadDefaultTracks(), and x_LoadSettings().

◆ x_LoadSettings() [2/2]

void CFeaturePanel::x_LoadSettings	(	const string &	preset_style,
		const TKeyValuePairs &	settings
	)

protectedvirtual

load the track settings.

By default, it does nothing.

Parameters

preset_style	a preset setting style name
settings	a list of track-specific setting in a form of key-value pair.

Reimplemented from CLayoutTrack.

Definition at line 811 of file feature_panel.cpp.

References CSGConfigUtils::DefTrackProfile(), CLayoutTrack::SetProfile(), and x_LoadSettings().

◆ x_NeedSpecialGrid()

bool CFeaturePanel::x_NeedSpecialGrid ( ) const

inlineprivate

need show special grid for the selected cds features.

Definition at line 316 of file feature_panel.hpp.

References m_SelCDSFeatures.

Referenced by x_Draw(), and x_RenderFeatureGrid().

◆ x_OnAssemblyLoaded()

void CFeaturePanel::x_OnAssemblyLoaded ( const list< CRef< objects::CGC_Assembly > > & assemblies )

private

Definition at line 472 of file feature_panel.cpp.

References a, map_checker< Container >::clear(), CFeaturePanelDS::GetAnnotMetaData(), CFeaturePanelDS::GetAssembly(), i, m_Assemblies, m_AssemblyLoaded, m_DefaultAssembly, CTrackContainer::m_DS, m_NAData, and CFeaturePanelDS::SetAssembly().

Referenced by x_OnJobCompleted(), and x_StartAssemblyJob().

◆ x_OnColorIconClicked()

void CFeaturePanel::x_OnColorIconClicked ( )

private

◆ x_OnDecorationIconClicked()

void CFeaturePanel::x_OnDecorationIconClicked ( )

private

◆ x_OnIconClicked()

void CFeaturePanel::x_OnIconClicked ( TIconID id )

protectedvirtual

override method in CLayoutTrack to handle speical cases.

Reimplemented from CTrackContainer.

Definition at line 915 of file feature_panel.cpp.

References eIcon_Color, eIcon_Decoration, eIcon_Label, CLayoutTrack::eIcon_Layout, eIcon_Size, x_OnColorIconClicked(), x_OnDecorationIconClicked(), CTrackContainer::x_OnIconClicked(), x_OnLabelIconClicked(), x_OnLayoutIconClicked(), and x_OnSizeIconClicked().

◆ x_OnJobCompleted()

void CFeaturePanel::x_OnJobCompleted ( CAppJobNotification & notify )

protectedvirtual

Reimplemented from CTrackContainer.

Definition at line 767 of file feature_panel.cpp.

References CFeaturePanelDS::ClearMetaDataJobId(), CAppJobNotification::GetResult(), CGetAssembliesJobResult::m_Assemblies, CTrackContainer::m_DS, m_NAData, result, x_InitNATracks(), x_OnAssemblyLoaded(), and CTrackContainer::x_OnJobCompleted().

◆ x_OnLabelIconClicked()

void CFeaturePanel::x_OnLabelIconClicked ( )

private

◆ x_OnLayoutIconClicked()

void CFeaturePanel::x_OnLayoutIconClicked ( )

private

Definition at line 940 of file feature_panel.cpp.

References Info(), ITERATE, LOG_POST, ILayoutTrackHost::LTH_PopupMenu(), m_IsMultiLevel, CLayoutTrack::m_LTHost, CTrackContainer::Traverse(), UseDefaultMarginWidth(), wxT, and x_ConfigureTracks().

Referenced by x_OnIconClicked().

◆ x_OnSizeIconClicked()

void CFeaturePanel::x_OnSizeIconClicked ( )

private

◆ x_RenderFeatureGrid()

void CFeaturePanel::x_RenderFeatureGrid ( ) const

private

◆ x_RenderHairLineSelections()

void CFeaturePanel::x_RenderHairLineSelections ( ) const

private

◆ x_RenderTitleBar()

void CFeaturePanel::x_RenderTitleBar ( ) const

protectedvirtual

Method for rendering the track title bar.

Reimplemented from CLayoutTrack.

Definition at line 846 of file feature_panel.cpp.

References a, b, IRender::Begin(), IRender::BlendFunc(), CGlRect< T >::Bottom(), IRender::Color4f(), delta(), IRender::End(), CLayoutTrack::fFrameVisible, GetGl(), CRenderingContext::GetOffset(), CRenderingContext::GetScale(), i, CGlRect< T >::Inflate(), l(), CGlRect< T >::Left(), CLayoutTrack::m_Attrs, m_CgiMode, CSeqGlyph::m_Context, CLayoutTrack::m_HighlightedIcon, CLayoutTrack::m_Icons, CLayoutTrack::m_Id, CLayoutTrack::m_ShowFrame, IRender::PolygonMode(), r(), CGlRect< T >::Right(), CRenderingContext::ScreenToSeq(), CRenderingContext::SeqToScreen(), CGlRect< T >::Top(), IRender::Vertex2f(), CGlRect< T >::Width(), CLayoutTrack::x_GetGlobalConfig(), x_GetTBRect(), and CLayoutTrack::x_RenderIcon().

Referenced by x_Draw().

◆ x_SaveSettings() [1/2]

void CFeaturePanel::x_SaveSettings ( )

private

Save settings for feature panel.

Definition at line 1469 of file feature_panel.cpp.

References CUtf8::AsUTF8(), CSGConfigUtils::DefLayout(), CRegistryWriteView::DeleteField(), eEncoding_Ascii, CTrackContainer::GetAnnotLevel(), CGuiRegistry::GetInstance(), CSeqGraphicConfig::GetLayout(), CLayoutTrack::GetProfile(), CSGConfigUtils::GetWriteView(), i, NStr::IntToString(), ITERATE, k_display_level, k_multi_level, CGuiRegistry::kDecimalDot, kEmptyStr, CSGConfigUtils::LayoutKey(), m_ConfigKey, m_DisplayLevels, CLayoutTrack::m_gConfig, m_IsMultiLevel, CTrackContainer::m_TrackProxies, m_TrackSettings, registry, CSeqGraphicConfig::SaveSettings(), CTempTrackProxy::SaveToRegistry(), CRegistryWriteView::Set(), CUser_field_Base::SetData(), CSeqGraphicConfig::SetDirty(), CRegistryWriteView::SetField(), CLayoutTrack::SetProfile(), CSeqGraphicConfig::SetTrackProfile(), NStr::StartsWith(), CTrackContainer::SyncSettings(), CSGConfigUtils::TrackProfileKey(), CSGConfigUtils::UserSettingPrefix(), and CLayoutTrack::x_GetGlobalConfig().

Referenced by x_OnDecorationIconClicked(), and x_SaveSettings().

◆ x_SaveSettings() [2/2]

void CFeaturePanel::x_SaveSettings ( const string & preset_style )

protectedvirtual

save the track settings to a profile string.

Reimplemented from CLayoutTrack.

Definition at line 823 of file feature_panel.cpp.

References x_SaveSettings().

◆ x_SetShowDisplayLevel()

void CFeaturePanel::x_SetShowDisplayLevel	(	TLevel	level,
		bool	show
	)

private

Definition at line 1834 of file feature_panel.cpp.

References m_DisplayLevels.

Referenced by x_LoadSettings().

◆ x_StartAssemblyJob()

void CFeaturePanel::x_StartAssemblyJob ( )

private

Friends And Related Function Documentation

◆ CConfigureTracksDlg

friend class CConfigureTracksDlg

friend

Definition at line 68 of file feature_panel.hpp.

Member Data Documentation

◆ m_Assemblies

vector<CRef<objects::CGC_Assembly> > CFeaturePanel::m_Assemblies

private

Definition at line 275 of file feature_panel.hpp.

Referenced by GetAssemblies(), and x_OnAssemblyLoaded().

◆ m_AssemblyLoaded

bool CFeaturePanel::m_AssemblyLoaded

private

Definition at line 274 of file feature_panel.hpp.

Referenced by AssemblyLoaded(), and x_OnAssemblyLoaded().

◆ m_CgiMode

bool CFeaturePanel::m_CgiMode

private

special flag indicating if it is in cgi mode.

we need this to avoid rendering some glyphs (like texture/icons)

Definition at line 256 of file feature_panel.hpp.

Referenced by ConfigureTracks(), Update(), x_ConfigureSubtracks(), x_Draw(), x_InitTrackIcons(), x_RenderTitleBar(), and ~CFeaturePanel().

◆ m_ConfigKey

string CFeaturePanel::m_ConfigKey

private

Base regitry key for panel setting and tracks default "GBPlugins.SeqGraphicFeatPanel" is for SV MSA sets its own "GBPlugins.MSAFeatPanel" to separate MSA and SV tracks.

Definition at line 266 of file feature_panel.hpp.

Referenced by LoadDefaultTracks(), SetConfigKey(), x_LoadSettings(), and x_SaveSettings().

◆ m_DefaultAssembly

string CFeaturePanel::m_DefaultAssembly

private

Definition at line 276 of file feature_panel.hpp.

Referenced by SetDefaultAssembly(), and x_OnAssemblyLoaded().

◆ m_DiscoverTracks

bool CFeaturePanel::m_DiscoverTracks = true

private

Definition at line 270 of file feature_panel.hpp.

Referenced by ConfigureTracks(), and SetDiscoverTracks().

◆ m_DisplayLevels

TDisplayLevels CFeaturePanel::m_DisplayLevels

private

Definition at line 249 of file feature_panel.hpp.

Referenced by x_ConfigureTracks(), x_GetShowDisplayLevel(), x_LoadSettings(), x_SaveSettings(), and x_SetShowDisplayLevel().

◆ m_DSContext

CIRef<ISGDataSourceContext> CFeaturePanel::m_DSContext

protected

Definition at line 230 of file feature_panel.hpp.

Referenced by SetDSContext(), SetInputObject(), x_ConfigureSubtracks(), and x_CreateLevelTrack().

◆ m_ExtLayoutTrack

CRef<CExternalLayoutTrack> CFeaturePanel::m_ExtLayoutTrack

private

Definition at line 236 of file feature_panel.hpp.

Referenced by SetExternalGlyphs().

◆ m_Gen

CRegularGridGen CFeaturePanel::m_Gen

private

graphical grid.

Definition at line 245 of file feature_panel.hpp.

Referenced by CFeaturePanel(), UpdateGridStep(), and x_Draw().

◆ m_Grid

CRegularGridRenderer CFeaturePanel::m_Grid

private

Definition at line 246 of file feature_panel.hpp.

Referenced by CFeaturePanel(), x_Draw(), and x_LoadSettings().

◆ m_IconTexInitialized

bool CFeaturePanel::m_IconTexInitialized

mutableprivate

flag indicating whether icon textures have been created.

Definition at line 252 of file feature_panel.hpp.

Referenced by x_Draw().

◆ m_ImageInfo

TImageInfo* CFeaturePanel::m_ImageInfo

private

Information about image that can be returned to client.

Definition at line 261 of file feature_panel.hpp.

Referenced by SetImageInfo(), and x_DrawHairLine().

◆ m_InputObj

SConstScopedObject CFeaturePanel::m_InputObj

protected

Definition at line 231 of file feature_panel.hpp.

Referenced by SetInputObject(), x_ConfigureSubtracks(), x_CreateLevelTrack(), and x_StartAssemblyJob().

◆ m_IsMultiLevel

bool CFeaturePanel::m_IsMultiLevel

private

Definition at line 248 of file feature_panel.hpp.

Referenced by CConfigureTracksDlg::CreateControls(), OnTrackInitFinished(), Update(), x_ConfigureTracks(), x_InitNATracks(), x_LoadSettings(), x_OnLayoutIconClicked(), and x_SaveSettings().

◆ m_NAData

TAnnotMetaDataList CFeaturePanel::m_NAData

private

Definition at line 272 of file feature_panel.hpp.

Referenced by ConfigureTracks(), SetAssembly(), x_ConfigureTracks(), x_InitNATracks(), x_OnAssemblyLoaded(), and x_OnJobCompleted().

◆ m_next_result

size_t CFeaturePanel::m_next_result = 0

private

Definition at line 290 of file feature_panel.hpp.

Referenced by FindText(), and ResetSearch().

◆ m_search_match_case

bool CFeaturePanel::m_search_match_case = false

private

Definition at line 289 of file feature_panel.hpp.

Referenced by FindText().

◆ m_search_results

vector<CMappedFeatOrObject> CFeaturePanel::m_search_results

private

Definition at line 291 of file feature_panel.hpp.

Referenced by FindText(), and ResetSearch().

◆ m_search_text

string CFeaturePanel::m_search_text

private

Definition at line 288 of file feature_panel.hpp.

Referenced by FindText(), and ResetSearch().

◆ m_SelCDSFeatures

const TSelectedGlyphs* CFeaturePanel::m_SelCDSFeatures

private

Definition at line 242 of file feature_panel.hpp.

Referenced by SetSelectedCDSFeats(), x_NeedSpecialGrid(), and x_RenderFeatureGrid().

◆ m_SelFeatures

const TSelectedGlyphs* CFeaturePanel::m_SelFeatures

private

Definition at line 241 of file feature_panel.hpp.

Referenced by SetSelectedFeats(), and x_RenderHairLineSelections().

◆ m_ServiceLocator

IServiceLocator* CFeaturePanel::m_ServiceLocator = 0

private

Definition at line 292 of file feature_panel.hpp.

Referenced by FindText(), ResetSearch(), and SetServiceLocator().

◆ m_TrackSettings

TTrackProxies CFeaturePanel::m_TrackSettings

private

initial track layout settings.

Definition at line 239 of file feature_panel.hpp.

Referenced by ConfigureTracks(), SetTrackConfig(), ShowTrack(), x_ConfigureSubtracks_Recursive(), x_ConfigureTracks(), x_LoadSettings(), and x_SaveSettings().

◆ m_TypeInfo

CTrackTypeInfo CFeaturePanel::m_TypeInfo

staticprivate

Definition at line 258 of file feature_panel.hpp.

Referenced by CFeaturePanel(), and GetTypeInfo().

The documentation for this class was generated from the following files:

include/gui/widgets/seq_graphic/feature_panel.hpp
src/gui/widgets/seq_graphic/feature_panel.cpp

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Friends

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TDisplayLevels

◆ TImageInfo

◆ TLevel

◆ TSelectedGlyphs

◆ TTrackSettings

◆ TTrackSettingsSet

Member Enumeration Documentation

◆ EFeatPanelIconID

Constructor & Destructor Documentation

◆ CFeaturePanel()

◆ ~CFeaturePanel()

Member Function Documentation

◆ AssemblyLoaded()

◆ ConfigureTracks()

◆ FindText()

◆ GetAnnotNames()

◆ GetAssemblies()

◆ GetCurrentAssembly()

◆ GetTypeInfo()

◆ HitTest()

◆ HitTestHor()

◆ LoadDefaultTracks()

◆ OnDataChanged()

◆ OnDataChanging()

◆ OnTrackInitFinished()

◆ ResetSearch()

◆ SaveTrackConfig()

◆ SetAssembly()

◆ SetConfigKey()

◆ SetDefaultAssembly()

◆ SetDiscoverTracks()

◆ SetDSContext()

◆ SetExternalGlyphs()

◆ SetImageInfo()

◆ SetInputObject()

◆ SetNonAsnInput()

◆ SetSelectedCDSFeats()

◆ SetSelectedFeats()

◆ SetServiceLocator()

◆ SetTrackConfig() [1/2]

◆ SetTrackConfig() [2/2]

◆ ShowConfigureTracksDlg()

◆ ShowTrack()

◆ SkipGenuineCheck()

◆ Update()

◆ UpdateGridStep()

◆ x_CalcGridStep()

◆ x_ConfigureSubtracks()

◆ x_ConfigureSubtracks_Recursive()

◆ x_ConfigureTracks()

◆ x_CreateLevelTrack()

◆ x_Draw()

◆ x_DrawHairLine()

◆ x_Empty()

◆ x_Expand()

◆ x_GetShowDisplayLevel()

◆ x_GetTBRect()

◆ x_InitNATracks()

◆ x_InitTrackIcons()

◆ x_IsJobNeeded()

◆ x_LoadSettings() [1/2]

◆ x_LoadSettings() [2/2]

◆ x_NeedSpecialGrid()

◆ x_OnAssemblyLoaded()

◆ x_OnColorIconClicked()

◆ x_OnDecorationIconClicked()

◆ x_OnIconClicked()

◆ x_OnJobCompleted()