NCBI C++ ToolKit
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CFeatureSeqTableColumnBase Class Reference

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#include <gui/packages/pkg_sequence_edit/featedit_util.hpp>

+ Inheritance diagram for CFeatureSeqTableColumnBase:
+ Collaboration diagram for CFeatureSeqTableColumnBase:

Public Member Functions

 CFeatureSeqTableColumnBase ()
virtual bool AddToFeature (objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)
virtual void ClearInFeature (objects::CSeq_feat &in_out_feat)
virtual string GetFromFeat (const objects::CSeq_feat &in_out_feat)
virtual string GetLabel () const
virtual bool RelaxedMatch (const objects::CSeq_feat &f1, const objects::CSeq_feat &f2) const
virtual vector< stringIsValid (const vector< string > &values)
virtual vector< CConstRef< CObject > > GetObjects (objects::CBioseq_Handle bsh)
virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects (objects::CBioseq_Handle bsh)
void SetSubtype (objects::CSeqFeatData::ESubtype subtype)
objects::CSeqFeatData::ESubtype GetSubtype ()
void SetMajorType (objects::CSeqFeatData::E_Choice major_type)
objects::CSeqFeatData::E_Choice GetMajorType ()
virtual vector< stringGetVals (const objects::CSeq_feat &feat)
virtual vector< CRef< objects::edit::CApplyObject > > GetRelatedGeneApplyObjects (objects::CBioseq_Handle bsh)
void SetScope (CRef< CScope > scope)
virtual bool AllowMultipleValues ()
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 CObject (const CObject &src)
 Copy constructor. More...
virtual ~CObject (void)
 Destructor. More...
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
void AddReference (void) const
 Add reference to object. More...
void RemoveReference (void) const
 Remove reference to object. More...
void ReleaseReference (void) const
 Remove reference without deleting object. More...
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
void * operator new (size_t size)
 Define new operator for memory allocation. More...
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
void * operator new (size_t size, void *place)
 Define new operator. More...
void operator delete (void *ptr, void *place)
 Define delete operator. More...
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
virtual ~CDebugDumpable (void)
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
void DumpToConsole (void) const

Protected Attributes

objects::CSeqFeatData::ESubtype m_Subtype
objects::CSeqFeatData::E_Choice m_MajorType
CRef< CScopem_Scope

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
typedef Uint8 TCount
 Alias for value type of counter. More...
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
static EAllocFillMode GetAllocFillMode (void)
static void SetAllocFillMode (EAllocFillMode mode)
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...

Detailed Description

Definition at line 60 of file featedit_util.hpp.

Constructor & Destructor Documentation

◆ CFeatureSeqTableColumnBase()

CFeatureSeqTableColumnBase::CFeatureSeqTableColumnBase ( )

Definition at line 63 of file featedit_util.hpp.

Member Function Documentation

◆ AddToFeature()

virtual bool CFeatureSeqTableColumnBase::AddToFeature ( objects::CSeq_feat &  in_out_feat,
const string newValue,
objects::edit::EExistingText  existing_text 

◆ AllowMultipleValues()

virtual bool CFeatureSeqTableColumnBase::AllowMultipleValues ( )

Reimplemented in CInferenceColumn.

Definition at line 84 of file featedit_util.hpp.

Referenced by CMiscSeqTableColumn::AllowMultipleValues().

◆ ClearInFeature()

virtual void CFeatureSeqTableColumnBase::ClearInFeature ( objects::CSeq_feat &  in_out_feat)

◆ GetApplyObjects()

vector< CRef< CApplyObject > > CFeatureSeqTableColumnBase::GetApplyObjects ( objects::CBioseq_Handle  bsh)

◆ GetFromFeat()

virtual string CFeatureSeqTableColumnBase::GetFromFeat ( const objects::CSeq_feat &  in_out_feat)

◆ GetLabel()

virtual string CFeatureSeqTableColumnBase::GetLabel ( void  ) const

◆ GetMajorType()

objects::CSeqFeatData::E_Choice CFeatureSeqTableColumnBase::GetMajorType ( )

Definition at line 80 of file featedit_util.hpp.

References m_MajorType.

◆ GetObjects()

vector< CConstRef< CObject > > CFeatureSeqTableColumnBase::GetObjects ( objects::CBioseq_Handle  bsh)

◆ GetRelatedGeneApplyObjects()

vector< CRef< CApplyObject > > CFeatureSeqTableColumnBase::GetRelatedGeneApplyObjects ( objects::CBioseq_Handle  bsh)

◆ GetSubtype()

objects::CSeqFeatData::ESubtype CFeatureSeqTableColumnBase::GetSubtype ( void  )

Definition at line 78 of file featedit_util.hpp.

References m_Subtype.

Referenced by CMiscSeqTableColumn::GetFeatureSubtype().

◆ GetVals()

virtual vector<string> CFeatureSeqTableColumnBase::GetVals ( const objects::CSeq_feat &  feat)

Definition at line 81 of file featedit_util.hpp.

◆ IsValid()

virtual vector<string> CFeatureSeqTableColumnBase::IsValid ( const vector< string > &  values)

◆ RelaxedMatch()

virtual bool CFeatureSeqTableColumnBase::RelaxedMatch ( const objects::CSeq_feat &  f1,
const objects::CSeq_feat &  f2 
) const

Reimplemented in CSatelliteTypeNameColumn.

Definition at line 73 of file featedit_util.hpp.

◆ SetMajorType()

void CFeatureSeqTableColumnBase::SetMajorType ( objects::CSeqFeatData::E_Choice  major_type)

◆ SetScope()

void CFeatureSeqTableColumnBase::SetScope ( CRef< CScope scope)

Definition at line 83 of file featedit_util.hpp.

References m_Scope.

Referenced by CMiscSeqTableColumn::SetScope().

◆ SetSubtype()

void CFeatureSeqTableColumnBase::SetSubtype ( objects::CSeqFeatData::ESubtype  subtype)

Definition at line 77 of file featedit_util.hpp.

References m_Subtype.

Referenced by CFeatureSeqTableColumnBaseFactory::Create().

Member Data Documentation

◆ m_MajorType

objects::CSeqFeatData::E_Choice CFeatureSeqTableColumnBase::m_MajorType

◆ m_Scope

CRef<CScope> CFeatureSeqTableColumnBase::m_Scope

◆ m_Subtype

objects::CSeqFeatData::ESubtype CFeatureSeqTableColumnBase::m_Subtype

The documentation for this class was generated from the following files:
Modified on Thu Jun 13 17:25:20 2024 by rev. 669887