Search Toolkit Book for CFlatXrefQVal
#include <objtools/format/items/qualifiers.hpp>
Inheritance diagram for CFlatXrefQVal:
Collaboration diagram for CFlatXrefQVal:
Public Types | |
| typedef CSeq_feat::TDbxref | TXref |
| typedef CQualContainer< EFeatureQualifier > | TQuals |
| Public Types inherited from IFlatQVal | |
| enum | EFlags { fIsNote = 0x1 , fIsSource = 0x2 , fAddPeriod = 0x4 , fPrependNewline = 0x8 } |
| typedef int | TFlags |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
Public Member Functions | |
| CFlatXrefQVal (const TXref &value, const TQuals *quals=0) | |
| void | Format (TFlatQuals &quals, const CTempString &name, CBioseqContext &ctx, TFlags flags) const |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Member Functions | |
| bool | x_XrefInGeneXref (const CDbtag &dbtag) const |
Private Attributes | |
| TXref | m_Value |
| CConstRef< TQuals > | m_Quals |
Additional Inherited Members | |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from IFlatQVal | |
| static const string | kSemicolon = ";" |
| static const string | kSemicolonEOL = ";\n" |
| static const string | kComma = "," |
| static const string | kEOL = "\n" |
| static const string | kSpace = " " |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Types inherited from IFlatQVal | |
| typedef CFormatQual::TStyle | TStyle |
| typedef CFormatQual::ETrim | ETrim |
| Protected Member Functions inherited from IFlatQVal | |
| IFlatQVal (const string *pfx=&kSpace, const string *sfx=&kEmptyStr) | |
| TFlatQual | x_AddFQ (TFlatQuals &q, const CTempString &n, const CTempString &v, TStyle st=CFormatQual::eQuoted, CFormatQual::TFlags flags=0, ETrim trim=CFormatQual::eTrim_Normal) const |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
| Protected Attributes inherited from IFlatQVal | |
| const string * | m_Prefix |
| const string * | m_Suffix |
Detailed Description
Definition at line 593 of file qualifiers.hpp.
Member Typedef Documentation
◆ TQuals
Definition at line 597 of file qualifiers.hpp.
◆ TXref
Definition at line 596 of file qualifiers.hpp.
Constructor & Destructor Documentation
◆ CFlatXrefQVal()
Definition at line 599 of file qualifiers.hpp.
Member Function Documentation
◆ Format()
|
virtual |
Implements IFlatQVal.
Definition at line 1426 of file qualifiers.cpp.
References CMolInfo_Base::CanGetTech(), ctx, CTempString::data(), CDbtag::eIsEstOrGss_No, CDbtag::eIsEstOrGss_Yes, CDbtag::eIsRefseq_No, CDbtag::eIsRefseq_Yes, CDbtag::eIsSource_No, CDbtag::eIsSource_Yes, ctll::empty(), set< Key, Compare >::end(), NStr::eNocase, NStr::EqualNocase(), CTempString::erase(), CMolInfo_Base::eTech_est, CMolInfo_Base::eTech_survey, set< Key, Compare >::find(), IFlatQVal::fIsSource, flags, CDbtag_Base::GetDb(), CMolInfo_Base::GetTech(), CDbtag::GetUrl(), set< Key, Compare >::insert(), NStr::IntToString(), CDbtag::IsApproved(), NStr::IsBlank(), ITERATE, CTempString::length(), m_Quals, m_Value, ncbi::grid::netcache::search::fields::size, ct::sort(), NStr::StartsWith(), tag, TrimSpacesAndJunkFromEnds(), IFlatQVal::x_AddFQ(), and x_XrefInGeneXref().
◆ x_XrefInGeneXref()
Definition at line 1541 of file qualifiers.cpp.
References eFQ_gene_xref, ITERATE, m_Quals, m_Value, and CDbtag::Match().
Referenced by Format().
Member Data Documentation
◆ m_Quals
Definition at line 608 of file qualifiers.hpp.
Referenced by Format(), and x_XrefInGeneXref().
◆ m_Value
|
private |
Definition at line 607 of file qualifiers.hpp.
Referenced by Format(), and x_XrefInGeneXref().
The documentation for this class was generated from the following files:
- include/objtools/format/items/qualifiers.hpp
- src/objtools/format/qualifiers.cpp
