NCBI C++ ToolKit
CGC_Assembly Member List

This is the complete list of members for CGC_Assembly, including all inherited members.

AddReference(void) constCObjectinline
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)CSerialObjectvirtual
CanBeDeleted(void) const THROWS_NONECObjectinline
CDebugDumpable(void)CDebugDumpableinline
CGC_Assembly(void)CGC_Assembly
CGC_Assembly(const CGC_Assembly &value)CGC_Assemblyprivate
CGC_Assembly_Base(void)CGC_Assembly_Base
CGC_Assembly_Base(const CGC_Assembly_Base &)CGC_Assembly_Baseprivate
CheckReferenceOverflow(TCount count) constCObjectprivate
CheckSelected(E_Choice index) constCGC_Assembly_Baseinline
CObject(void)CObject
CObject(const CObject &src)CObject
CreateHierarchy(CGC_Assembly *target_set=NULL)CGC_Assembly
CreateIndex()CGC_Assembly
CSerialObject(void)CSerialObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCSerialObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DECLARE_INTERNAL_TYPE_INFO()CGC_Assembly_Base
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DoSelect(E_Choice index, CObjectMemoryPool *pool=0)CGC_Assembly_Baseprivate
DumpToConsole(void) constCDebugDumpable
e_Assembly_set enum valueCGC_Assembly_Base
E_Choice enum nameCGC_Assembly_Base
E_ChoiceStopper enum nameCGC_Assembly_Base
e_MaxChoice enum valueCGC_Assembly_Base
e_not_set enum valueCGC_Assembly_Base
e_Unit enum valueCGC_Assembly_Base
eAll enum valueCGC_Assembly
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eChooseAny enum valueCGC_Assembly
eChooseBest enum valueCGC_Assembly
eChromosome enum valueCGC_Assembly
eComponent enum valueCGC_Assembly
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
eEnforceSingle enum valueCGC_Assembly
EFindSeqOption enum nameCGC_Assembly
EnableDebugDump(bool on)CDebugDumpablestatic
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) constCSerialObjectvirtual
eScaffold enum valueCGC_Assembly
eSubmitterPseudoScaffold enum valueCGC_Assembly
ESubset enum nameCGC_Assembly
eTopLevel enum valueCGC_Assembly
Find(const CSeq_id_Handle &id, TSequenceList &sequences) constCGC_Assembly
Find(const CSeq_id_Handle &id, EFindSeqOption find_option=eEnforceSingle) constCGC_Assembly
GetAccession() constCGC_Assembly
GetAllocFillMode(void)CObjectstatic
GetAssembly_set(void) constCGC_Assembly_Base
GetAssemblyUnits() constCGC_Assembly
GetBestIdentifier() constCGC_Assembly
GetDesc() constCGC_Assembly
GetDisplayName() constCGC_Assembly
GetFileSafeDisplayName() constCGC_Assembly
GetFileSafeName() constCGC_Assembly
GetFullAssemblies() constCGC_Assembly
GetMolecules(TSequenceList &molecules, ESubset subset) constCGC_Assembly
GetMoleculesByUnit(vector< TSequenceList > &molecules, ESubset subset) constCGC_Assembly
GetName() constCGC_Assembly
GetNamespaceName(void) constCSerialObject
GetNamespacePrefix(void) constCSerialObject
GetReleaseId() constCGC_Assembly
GetRepliconTypeLocRole(const CSeq_id_Handle &id, string &type, string &location, set< int > &role) constCGC_Assembly
GetTargetSet() constCGC_Assembly
GetTaxId() constCGC_Assembly
GetThisTypeInfo(void) const =0CSerialObjectpure virtual
GetUnit(void) constCGC_Assembly_Base
GetUnitClass() constCGC_Assembly
HasNamespaceName(void) constCSerialObject
HasNamespacePrefix(void) constCSerialObject
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsAssembly_set(void) constCGC_Assembly_Baseinline
IsGenBank() constCGC_Assembly
IsOrganelle() constCGC_Assembly
IsRefSeq() constCGC_Assembly
IsTargetSetReference() constCGC_Assembly
IsUnit(void) constCGC_Assembly_Baseinline
m_choiceCGC_Assembly_Baseprivate
m_CounterCObjectmutableprivate
m_MutexCGC_Assemblyprivate
m_objectCGC_Assembly_Baseprivate
m_SequenceMapCGC_Assemblyprivate
m_TargetSetCGC_Assemblyprivate
ms_UnassignedByteCSerialObjectstatic
ms_UnassignedStrCSerialObjectstatic
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CGC_Assembly &value)CGC_Assemblyprivate
CSerialObject::operator=(const CObject &src) THROWS_NONECObjectinline
PostRead()CGC_Assembly
PreWrite() constCGC_Assembly
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Reset(void)CGC_Assembly_Basevirtual
ResetSelection(void)CGC_Assembly_Basevirtual
Select(E_Choice index, EResetVariant reset=eDoResetVariant)CGC_Assembly_Base
Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)CGC_Assembly_Base
SelectionName(E_Choice index)CGC_Assembly_Basestatic
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetAssembly_set(void)CGC_Assembly_Base
SetAssembly_set(TAssembly_set &value)CGC_Assembly_Base
SetUnit(void)CGC_Assembly_Base
SetUnit(TUnit &value)CGC_Assembly_Base
SetVerifyDataGlobal(ESerialVerifyData verify)CSerialObjectstatic
SetVerifyDataThread(ESerialVerifyData verify)CSerialObjectstatic
sm_DumpEnabledCDebugDumpableprivatestatic
sm_SelectionNamesCGC_Assembly_Baseprivatestatic
TAssembly_set typedefCGC_Assembly_Base
TAssemblyUnits typedefCGC_Assembly
TCount typedefCObject
TCounter typedefCObject
TFullAssemblies typedefCGC_Assembly
ThrowInvalidSelection(E_Choice index) constCGC_Assembly_Base
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
ThrowUnassigned(TMemberIndex index) constCSerialObject
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) constCSerialObject
TLockerType typedefCObject
Tparent typedefCGC_Assemblyprivate
TSequenceIndex typedefCGC_Assemblyprivate
TSequenceList typedefCGC_Assembly
TUnit typedefCGC_Assembly_Base
UnassignedByte(void)CSerialObjectinlinestatic
UnassignedString(void)CSerialObjectinlinestatic
UnassignedStringUTF8(void)CSerialObjectinlinestatic
Which(void) constCGC_Assembly_Baseinline
x_GetId() constCGC_Assemblyprivate
x_GetSubmitterId() constCGC_Assemblyprivate
x_GetVerifyData(void)CSerialObjectprivatestatic
x_Index(CGC_Assembly &assm, CGC_Replicon &replicon)CGC_Assemblyprivate
x_Index(CGC_Assembly &assm, CGC_Sequence &seq)CGC_Assemblyprivate
x_Index(CGC_AssemblyUnit &unit, CGC_Replicon &replicon)CGC_Assemblyprivate
x_Index(CGC_AssemblyUnit &unit, CGC_Sequence &seq)CGC_Assemblyprivate
x_Index(CGC_Replicon &replicon, CGC_Sequence &seq)CGC_Assemblyprivate
x_Index(CGC_Sequence &parent, CGC_Sequence &seq, CGC_TaggedSequences::TState relation)CGC_Assemblyprivate
x_Index(CGC_Sequence &seq, CGC_TaggedSequences::TState relation)CGC_Assemblyprivate
x_Index(CGC_Assembly &root)CGC_Assemblyprivate
~CDebugDumpable(void)CDebugDumpablevirtual
~CGC_Assembly(void)CGC_Assembly
~CGC_Assembly_Base(void)CGC_Assembly_Basevirtual
~CObject(void)CObjectvirtual
~CSerialObject(void)CSerialObjectvirtual
Modified on Sat Jun 22 10:41:17 2024 by modify_doxy.py rev. 669887