NCBI C++ ToolKit
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Represents ASN.1 type GC-AssemblyDesc defined in file genome_collection.asn

Search Toolkit Book for CGC_AssemblyDesc

CGC_AssemblyDesc –. More...

#include <objects/genomecoll/GC_AssemblyDesc.hpp>

+ Inheritance diagram for CGC_AssemblyDesc:
+ Collaboration diagram for CGC_AssemblyDesc:

Public Member Functions

 CGC_AssemblyDesc (void)
 
 ~CGC_AssemblyDesc (void)
 
- Public Member Functions inherited from CGC_AssemblyDesc_Base
 CGC_AssemblyDesc_Base (void)
 
virtual ~CGC_AssemblyDesc_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetProjects (void) const
 project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
 
bool CanGetProjects (void) const
 Check if it is safe to call GetProjects method. More...
 
void ResetProjects (void)
 Reset Projects data member. More...
 
const TProjectsGetProjects (void) const
 Get the Projects member data. More...
 
TProjectsSetProjects (void)
 Assign a value to Projects data member. More...
 
bool IsSetName (void) const
 Names of the assembly Check if a value has been assigned to Name data member. More...
 
bool CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void ResetName (void)
 Reset Name data member. More...
 
const TNameGetName (void) const
 Get the Name member data. More...
 
void SetName (const TName &value)
 Assign a value to Name data member. More...
 
void SetName (TName &&value)
 
TNameSetName (void)
 Assign a value to Name data member. More...
 
bool IsSetSubmitter_name (void) const
 Check if a value has been assigned to Submitter_name data member. More...
 
bool CanGetSubmitter_name (void) const
 Check if it is safe to call GetSubmitter_name method. More...
 
void ResetSubmitter_name (void)
 Reset Submitter_name data member. More...
 
const TSubmitter_nameGetSubmitter_name (void) const
 Get the Submitter_name member data. More...
 
void SetSubmitter_name (const TSubmitter_name &value)
 Assign a value to Submitter_name data member. More...
 
void SetSubmitter_name (TSubmitter_name &&value)
 
TSubmitter_nameSetSubmitter_name (void)
 Assign a value to Submitter_name data member. More...
 
bool IsSetDisplay_name (void) const
 Check if a value has been assigned to Display_name data member. More...
 
bool CanGetDisplay_name (void) const
 Check if it is safe to call GetDisplay_name method. More...
 
void ResetDisplay_name (void)
 Reset Display_name data member. More...
 
const TDisplay_nameGetDisplay_name (void) const
 Get the Display_name member data. More...
 
void SetDisplay_name (const TDisplay_name &value)
 Assign a value to Display_name data member. More...
 
void SetDisplay_name (TDisplay_name &&value)
 
TDisplay_nameSetDisplay_name (void)
 Assign a value to Display_name data member. More...
 
bool IsSetLong_name (void) const
 Check if a value has been assigned to Long_name data member. More...
 
bool CanGetLong_name (void) const
 Check if it is safe to call GetLong_name method. More...
 
void ResetLong_name (void)
 Reset Long_name data member. More...
 
const TLong_nameGetLong_name (void) const
 Get the Long_name member data. More...
 
void SetLong_name (const TLong_name &value)
 Assign a value to Long_name data member. More...
 
void SetLong_name (TLong_name &&value)
 
TLong_nameSetLong_name (void)
 Assign a value to Long_name data member. More...
 
bool IsSetFilesafe_name (void) const
 Check if a value has been assigned to Filesafe_name data member. More...
 
bool CanGetFilesafe_name (void) const
 Check if it is safe to call GetFilesafe_name method. More...
 
void ResetFilesafe_name (void)
 Reset Filesafe_name data member. More...
 
const TFilesafe_nameGetFilesafe_name (void) const
 Get the Filesafe_name member data. More...
 
void SetFilesafe_name (const TFilesafe_name &value)
 Assign a value to Filesafe_name data member. More...
 
void SetFilesafe_name (TFilesafe_name &&value)
 
TFilesafe_nameSetFilesafe_name (void)
 Assign a value to Filesafe_name data member. More...
 
bool IsSetWgs_acc_prefix (void) const
 Check if a value has been assigned to Wgs_acc_prefix data member. More...
 
bool CanGetWgs_acc_prefix (void) const
 Check if it is safe to call GetWgs_acc_prefix method. More...
 
void ResetWgs_acc_prefix (void)
 Reset Wgs_acc_prefix data member. More...
 
const TWgs_acc_prefixGetWgs_acc_prefix (void) const
 Get the Wgs_acc_prefix member data. More...
 
void SetWgs_acc_prefix (const TWgs_acc_prefix &value)
 Assign a value to Wgs_acc_prefix data member. More...
 
void SetWgs_acc_prefix (TWgs_acc_prefix &&value)
 
TWgs_acc_prefixSetWgs_acc_prefix (void)
 Assign a value to Wgs_acc_prefix data member. More...
 
bool IsSetWgs_acc_number (void) const
 Check if a value has been assigned to Wgs_acc_number data member. More...
 
bool CanGetWgs_acc_number (void) const
 Check if it is safe to call GetWgs_acc_number method. More...
 
void ResetWgs_acc_number (void)
 Reset Wgs_acc_number data member. More...
 
TWgs_acc_number GetWgs_acc_number (void) const
 Get the Wgs_acc_number member data. More...
 
void SetWgs_acc_number (TWgs_acc_number value)
 Assign a value to Wgs_acc_number data member. More...
 
TWgs_acc_numberSetWgs_acc_number (void)
 Assign a value to Wgs_acc_number data member. More...
 
bool IsSetRelease_type (void) const
 Check if a value has been assigned to Release_type data member. More...
 
bool CanGetRelease_type (void) const
 Check if it is safe to call GetRelease_type method. More...
 
void ResetRelease_type (void)
 Reset Release_type data member. More...
 
TRelease_type GetRelease_type (void) const
 Get the Release_type member data. More...
 
void SetRelease_type (TRelease_type value)
 Assign a value to Release_type data member. More...
 
TRelease_typeSetRelease_type (void)
 Assign a value to Release_type data member. More...
 
bool IsSetRelease_status (void) const
 Check if a value has been assigned to Release_status data member. More...
 
bool CanGetRelease_status (void) const
 Check if it is safe to call GetRelease_status method. More...
 
void ResetRelease_status (void)
 Reset Release_status data member. More...
 
TRelease_status GetRelease_status (void) const
 Get the Release_status member data. More...
 
void SetRelease_status (TRelease_status value)
 Assign a value to Release_status data member. More...
 
TRelease_statusSetRelease_status (void)
 Assign a value to Release_status data member. More...
 
bool IsSetAnnot (void) const
 in alt-loci units - contain alignment of this sequence to the primary unit Check if a value has been assigned to Annot data member. More...
 
bool CanGetAnnot (void) const
 Check if it is safe to call GetAnnot method. More...
 
void ResetAnnot (void)
 Reset Annot data member. More...
 
const TAnnotGetAnnot (void) const
 Get the Annot member data. More...
 
TAnnotSetAnnot (void)
 Assign a value to Annot data member. More...
 
bool IsSetSynonyms (void) const
 Synonyms: Other releases of same assembly Check if a value has been assigned to Synonyms data member. More...
 
bool CanGetSynonyms (void) const
 Check if it is safe to call GetSynonyms method. More...
 
void ResetSynonyms (void)
 Reset Synonyms data member. More...
 
const TSynonymsGetSynonyms (void) const
 Get the Synonyms member data. More...
 
TSynonymsSetSynonyms (void)
 Assign a value to Synonyms data member. More...
 
bool IsSetSubmitter_date (void) const
 Submitter release date Check if a value has been assigned to Submitter_date data member. More...
 
bool CanGetSubmitter_date (void) const
 Check if it is safe to call GetSubmitter_date method. More...
 
void ResetSubmitter_date (void)
 Reset Submitter_date data member. More...
 
const TSubmitter_dateGetSubmitter_date (void) const
 Get the Submitter_date member data. More...
 
void SetSubmitter_date (TSubmitter_date &value)
 Assign a value to Submitter_date data member. More...
 
TSubmitter_dateSetSubmitter_date (void)
 Assign a value to Submitter_date data member. More...
 
bool IsSetDescr (void) const
 Various attributes assigned at this level: biosrc, comments, publications... More...
 
bool CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrGetDescr (void) const
 Get the Descr member data. More...
 
void SetDescr (TDescr &value)
 Assign a value to Descr data member. More...
 
TDescrSetDescr (void)
 Assign a value to Descr data member. More...
 
bool IsSetPartial (void) const
 flag: is this assembly partial? **NOTE: not set = not known!! Check if a value has been assigned to Partial data member. More...
 
bool CanGetPartial (void) const
 Check if it is safe to call GetPartial method. More...
 
void ResetPartial (void)
 Reset Partial data member. More...
 
TPartial GetPartial (void) const
 Get the Partial member data. More...
 
void SetPartial (TPartial value)
 Assign a value to Partial data member. More...
 
TPartialSetPartial (void)
 Assign a value to Partial data member. More...
 
bool IsSetCoverage (void) const
 level of coverage for this assembly **NOTE: not set = not known!! Check if a value has been assigned to Coverage data member. More...
 
bool CanGetCoverage (void) const
 Check if it is safe to call GetCoverage method. More...
 
void ResetCoverage (void)
 Reset Coverage data member. More...
 
TCoverage GetCoverage (void) const
 Get the Coverage member data. More...
 
void SetCoverage (TCoverage value)
 Assign a value to Coverage data member. More...
 
TCoverageSetCoverage (void)
 Assign a value to Coverage data member. More...
 
bool IsSetRelease_level (void) const
 Check if a value has been assigned to Release_level data member. More...
 
bool CanGetRelease_level (void) const
 Check if it is safe to call GetRelease_level method. More...
 
void ResetRelease_level (void)
 Reset Release_level data member. More...
 
void SetDefaultRelease_level (void)
 Assign default value to Release_level data member. More...
 
TRelease_level GetRelease_level (void) const
 Get the Release_level member data. More...
 
void SetRelease_level (TRelease_level value)
 Assign a value to Release_level data member. More...
 
TRelease_levelSetRelease_level (void)
 Assign a value to Release_level data member. More...
 
bool IsSetSubmitter_organization (void) const
 organization which submitted this assembly. More...
 
bool CanGetSubmitter_organization (void) const
 Check if it is safe to call GetSubmitter_organization method. More...
 
void ResetSubmitter_organization (void)
 Reset Submitter_organization data member. More...
 
const TSubmitter_organizationGetSubmitter_organization (void) const
 Get the Submitter_organization member data. More...
 
void SetSubmitter_organization (const TSubmitter_organization &value)
 Assign a value to Submitter_organization data member. More...
 
void SetSubmitter_organization (TSubmitter_organization &&value)
 
TSubmitter_organizationSetSubmitter_organization (void)
 Assign a value to Submitter_organization data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CGC_AssemblyDesc_Base Tparent
 

Private Member Functions

 CGC_AssemblyDesc (const CGC_AssemblyDesc &value)
 
CGC_AssemblyDescoperator= (const CGC_AssemblyDesc &value)
 

Additional Inherited Members

- Public Types inherited from CGC_AssemblyDesc_Base
enum  ERelease_type { eRelease_type_genbank = 1 , eRelease_type_refseq = 2 }
 release type: RefSeq / GenBank. More...
 
enum  ERelease_status {
  eRelease_status_new = 0 , eRelease_status_gpipe = 5 , eRelease_status_public = 10 , eRelease_status_suppressed = 15 ,
  eRelease_status_hup = 100 , eRelease_status_withdrawn = 105
}
 release status (numeric values have gaps for possible additional states More...
 
enum  ERelease_level { eRelease_level_major = 0 , eRelease_level_patch = 1 , eRelease_level_minor = 2 , eRelease_level_other = 255 }
 release level: Most of releases are major More...
 
enum class  E_memberIndex {
  e__allMandatory = 0 , e_projects , e_name , e_submitter_name ,
  e_display_name , e_long_name , e_filesafe_name , e_wgs_acc_prefix ,
  e_wgs_acc_number , e_release_type , e_release_status , e_annot ,
  e_synonyms , e_submitter_date , e_descr , e_partial ,
  e_coverage , e_release_level , e_submitter_organization
}
 
typedef list< CRef< CGC_Project > > TProjects
 
typedef string TName
 
typedef string TSubmitter_name
 
typedef string TDisplay_name
 
typedef CStringUTF8 TLong_name
 
typedef string TFilesafe_name
 
typedef string TWgs_acc_prefix
 
typedef int TWgs_acc_number
 
typedef int TRelease_type
 
typedef int TRelease_status
 
typedef list< CRef< CSeq_annot > > TAnnot
 
typedef list< CRef< CGC_DbTagAlias > > TSynonyms
 
typedef CDate TSubmitter_date
 
typedef CSeq_descr TDescr
 
typedef bool TPartial
 
typedef double TCoverage
 
typedef int TRelease_level
 
typedef CStringUTF8 TSubmitter_organization
 
typedef Tparent::CMemberIndex< E_memberIndex, 19 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CGC_AssemblyDesc_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() ERelease_type (void)
 Access to ERelease_type's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() ERelease_status (void)
 Access to ERelease_status's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() ERelease_level (void)
 Access to ERelease_level's attributes (values, names) as defined in spec. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CGC_AssemblyDesc –.

Definition at line 65 of file GC_AssemblyDesc.hpp.


The documentation for this class was generated from the following files:
Modified on Tue Apr 16 20:10:14 2024 by modify_doxy.py rev. 669887