NCBI C++ ToolKit
Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members

Represents ASN.1 type GC-Genome defined in file genome_collection.asn

Search Toolkit Book for CGC_Genome_Base

CGC_Genome_Base –. More...

#include <objects/genomecoll/GC_Genome_.hpp>

+ Inheritance diagram for CGC_Genome_Base:
+ Collaboration diagram for CGC_Genome_Base:

Public Types

enum class  E_memberIndex {
  e__allMandatory = 0 , e_id , e_projects , e_descr ,
  e_chr_names , e_parts
}
 
typedef list< CRef< CDbtag > > TId
 
typedef list< CRef< CGC_Project > > TProjects
 
typedef CSeq_descr TDescr
 
typedef list< stringTChr_names
 
typedef list< CRef< CGC_GenomicPart > > TParts
 
typedef Tparent::CMemberIndex< E_memberIndex, 6 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 

Public Member Functions

 CGC_Genome_Base (void)
 
virtual ~CGC_Genome_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetId (void) const
 Gencoll identifier for this genome Check if a value has been assigned to Id data member. More...
 
bool CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void ResetId (void)
 Reset Id data member. More...
 
const TIdGetId (void) const
 Get the Id member data. More...
 
TIdSetId (void)
 Assign a value to Id data member. More...
 
bool IsSetProjects (void) const
 project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
 
bool CanGetProjects (void) const
 Check if it is safe to call GetProjects method. More...
 
void ResetProjects (void)
 Reset Projects data member. More...
 
const TProjectsGetProjects (void) const
 Get the Projects member data. More...
 
TProjectsSetProjects (void)
 Assign a value to Projects data member. More...
 
bool IsSetDescr (void) const
 Various attributes assigned at this level: biosrc, comments, publications... More...
 
bool CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrGetDescr (void) const
 Get the Descr member data. More...
 
void SetDescr (TDescr &value)
 Assign a value to Descr data member. More...
 
TDescrSetDescr (void)
 Assign a value to Descr data member. More...
 
bool IsSetChr_names (void) const
 official list of chromosome names this should be the complete expected set of chromosomes regardless of whether they are represented in *any* genomic part Check if a value has been assigned to Chr_names data member. More...
 
bool CanGetChr_names (void) const
 Check if it is safe to call GetChr_names method. More...
 
void ResetChr_names (void)
 Reset Chr_names data member. More...
 
const TChr_namesGetChr_names (void) const
 Get the Chr_names member data. More...
 
TChr_namesSetChr_names (void)
 Assign a value to Chr_names data member. More...
 
bool IsSetParts (void) const
 the bits that make up this genome this preserves the expected display order Check if a value has been assigned to Parts data member. More...
 
bool CanGetParts (void) const
 Check if it is safe to call GetParts method. More...
 
void ResetParts (void)
 Reset Parts data member. More...
 
const TPartsGetParts (void) const
 Get the Parts member data. More...
 
TPartsSetParts (void)
 Assign a value to Parts data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef CSerialObject Tparent
 

Private Member Functions

 CGC_Genome_Base (const CGC_Genome_Base &)
 
CGC_Genome_Baseoperator= (const CGC_Genome_Base &)
 

Private Attributes

Uint4 m_set_State [1]
 
list< CRef< CDbtag > > m_Id
 
list< CRef< CGC_Project > > m_Projects
 
CRef< TDescrm_Descr
 
list< stringm_Chr_names
 
list< CRef< CGC_GenomicPart > > m_Parts
 

Additional Inherited Members

- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

CGC_Genome_Base –.

Definition at line 80 of file GC_Genome_.hpp.


The documentation for this class was generated from the following files:
Modified on Sat May 25 14:21:18 2024 by modify_doxy.py rev. 669887