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| CGC_Replicon (void) |
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| ~CGC_Replicon (void) |
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CConstRef< CGC_AssemblyUnit > | GetAssemblyUnit () const |
| Access the assembly unit the sequence belongs to. More...
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CConstRef< CGC_Assembly > | GetFullAssembly () const |
| Access the most specific full assembly the replicon belongs to This is needed because assemblies are packaged as sets of assemblies; knowing the unit is not always enough. More...
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string | GetMoleculeLocation () const |
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string | GetMoleculeType () const |
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string | GetMoleculeLabel () const |
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| CGC_Replicon_Base (void) |
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virtual | ~CGC_Replicon_Base (void) |
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| DECLARE_INTERNAL_TYPE_INFO () |
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bool | IsSetName (void) const |
| name for this molecule the official name, Check if a value has been assigned to Name data member. More...
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bool | CanGetName (void) const |
| Check if it is safe to call GetName method. More...
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void | ResetName (void) |
| Reset Name data member. More...
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const TName & | GetName (void) const |
| Get the Name member data. More...
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void | SetName (const TName &value) |
| Assign a value to Name data member. More...
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void | SetName (TName &&value) |
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TName & | SetName (void) |
| Assign a value to Name data member. More...
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bool | IsSetLocal_name (void) const |
| If the chromosome has a different name in this assembly. More...
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bool | CanGetLocal_name (void) const |
| Check if it is safe to call GetLocal_name method. More...
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void | ResetLocal_name (void) |
| Reset Local_name data member. More...
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const TLocal_name & | GetLocal_name (void) const |
| Get the Local_name member data. More...
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void | SetLocal_name (const TLocal_name &value) |
| Assign a value to Local_name data member. More...
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void | SetLocal_name (TLocal_name &&value) |
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TLocal_name & | SetLocal_name (void) |
| Assign a value to Local_name data member. More...
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bool | IsSetSequence (void) const |
| Check if a value has been assigned to Sequence data member. More...
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bool | CanGetSequence (void) const |
| Check if it is safe to call GetSequence method. More...
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void | ResetSequence (void) |
| Reset Sequence data member. More...
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const TSequence & | GetSequence (void) const |
| Get the Sequence member data. More...
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void | SetSequence (TSequence &value) |
| Assign a value to Sequence data member. More...
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TSequence & | SetSequence (void) |
| Assign a value to Sequence data member. More...
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virtual void | Reset (void) |
| Reset the whole object. More...
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| CSerialObject (void) |
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virtual | ~CSerialObject (void) |
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virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
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virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More...
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virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More...
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virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More...
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void | ThrowUnassigned (TMemberIndex index) const |
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void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
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bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More...
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const string & | GetNamespaceName (void) const |
| Get namespace name. More...
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bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More...
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const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More...
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| CObject (void) |
| Constructor. More...
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| CObject (const CObject &src) |
| Copy constructor. More...
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virtual | ~CObject (void) |
| Destructor. More...
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CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More...
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bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More...
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bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More...
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bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More...
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bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More...
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void | AddReference (void) const |
| Add reference to object. More...
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void | RemoveReference (void) const |
| Remove reference to object. More...
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void | ReleaseReference (void) const |
| Remove reference without deleting object. More...
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virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More...
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virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More...
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void * | operator new (size_t size) |
| Define new operator for memory allocation. More...
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void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More...
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void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More...
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void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More...
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void * | operator new (size_t size, void *place) |
| Define new operator. More...
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void | operator delete (void *ptr, void *place) |
| Define delete operator. More...
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void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More...
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void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More...
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| CDebugDumpable (void) |
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virtual | ~CDebugDumpable (void) |
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void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
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void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
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void | DumpToConsole (void) const |
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Definition at line 53 of file GC_Replicon.hpp.