|
| CGC_SeqIdAlias (void) |
|
| ~CGC_SeqIdAlias (void) |
|
| CGC_SeqIdAlias_Base (void) |
|
virtual | ~CGC_SeqIdAlias_Base (void) |
|
| DECLARE_INTERNAL_TYPE_INFO () |
|
bool | IsSetPublic (void) const |
| the refseq/genbank accession Check if a value has been assigned to Public data member. More...
|
|
bool | CanGetPublic (void) const |
| Check if it is safe to call GetPublic method. More...
|
|
void | ResetPublic (void) |
| Reset Public data member. More...
|
|
const TPublic & | GetPublic (void) const |
| Get the Public member data. More...
|
|
void | SetPublic (TPublic &value) |
| Assign a value to Public data member. More...
|
|
TPublic & | SetPublic (void) |
| Assign a value to Public data member. More...
|
|
bool | IsSetGpipe (void) const |
| the gpipe accession Check if a value has been assigned to Gpipe data member. More...
|
|
bool | CanGetGpipe (void) const |
| Check if it is safe to call GetGpipe method. More...
|
|
void | ResetGpipe (void) |
| Reset Gpipe data member. More...
|
|
const TGpipe & | GetGpipe (void) const |
| Get the Gpipe member data. More...
|
|
void | SetGpipe (TGpipe &value) |
| Assign a value to Gpipe data member. More...
|
|
TGpipe & | SetGpipe (void) |
| Assign a value to Gpipe data member. More...
|
|
bool | IsSetGi (void) const |
| optional since not all sequences have GIs Similarity: relationship between this synonym to main seqid of the GC-Sequence Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different levels Check if a value has been assigned to Gi data member. More...
|
|
bool | CanGetGi (void) const |
| Check if it is safe to call GetGi method. More...
|
|
void | ResetGi (void) |
| Reset Gi data member. More...
|
|
const TGi & | GetGi (void) const |
| Get the Gi member data. More...
|
|
void | SetGi (TGi &value) |
| Assign a value to Gi data member. More...
|
|
TGi & | SetGi (void) |
| Assign a value to Gi data member. More...
|
|
bool | IsSetSimilarity (void) const |
| Check if a value has been assigned to Similarity data member. More...
|
|
bool | CanGetSimilarity (void) const |
| Check if it is safe to call GetSimilarity method. More...
|
|
void | ResetSimilarity (void) |
| Reset Similarity data member. More...
|
|
TSimilarity | GetSimilarity (void) const |
| Get the Similarity member data. More...
|
|
void | SetSimilarity (TSimilarity value) |
| Assign a value to Similarity data member. More...
|
|
TSimilarity & | SetSimilarity (void) |
| Assign a value to Similarity data member. More...
|
|
virtual void | Reset (void) |
| Reset the whole object. More...
|
|
| CSerialObject (void) |
|
virtual | ~CSerialObject (void) |
|
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
|
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More...
|
|
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More...
|
|
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More...
|
|
void | ThrowUnassigned (TMemberIndex index) const |
|
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
|
bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More...
|
|
const string & | GetNamespaceName (void) const |
| Get namespace name. More...
|
|
bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More...
|
|
const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More...
|
|
| CObject (void) |
| Constructor. More...
|
|
| CObject (const CObject &src) |
| Copy constructor. More...
|
|
virtual | ~CObject (void) |
| Destructor. More...
|
|
CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More...
|
|
bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More...
|
|
bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More...
|
|
bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More...
|
|
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More...
|
|
void | AddReference (void) const |
| Add reference to object. More...
|
|
void | RemoveReference (void) const |
| Remove reference to object. More...
|
|
void | ReleaseReference (void) const |
| Remove reference without deleting object. More...
|
|
virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More...
|
|
virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More...
|
|
void * | operator new (size_t size) |
| Define new operator for memory allocation. More...
|
|
void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More...
|
|
void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More...
|
|
void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More...
|
|
void * | operator new (size_t size, void *place) |
| Define new operator. More...
|
|
void | operator delete (void *ptr, void *place) |
| Define delete operator. More...
|
|
void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More...
|
|
void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More...
|
|
| CDebugDumpable (void) |
|
virtual | ~CDebugDumpable (void) |
|
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
|
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
|
void | DumpToConsole (void) const |
|
Definition at line 53 of file GC_SeqIdAlias.hpp.