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CGen_code_table_imp Class Reference

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+ Inheritance diagram for CGen_code_table_imp:
+ Collaboration diagram for CGen_code_table_imp:

Public Member Functions

 CGen_code_table_imp (void)
 
 CGen_code_table_imp (CObjectIStream &ois)
 
 ~CGen_code_table_imp (void)
 
const CTrans_tableGetTransTable (int gc)
 
const CTrans_tableGetTransTable (const CGenetic_code &gc)
 
const CGenetic_code_tableGetCodeTable (void)
 
const stringGetNcbieaa (int id) const
 
const stringGetNcbieaa (const CGenetic_code &gc) const
 
const stringGetSncbieaa (int id) const
 
const stringGetSncbieaa (const CGenetic_code &gc) const
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Private Types

typedef vector< CRef< CTrans_table > > TTransTablesById
 

Private Attributes

CRef< CGenetic_code_tablem_GcTable
 
TTransTablesById m_TransTablesById
 

Static Private Attributes

static const char *const sm_GenCodeTblMemStr []
 

Additional Inherited Members

- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

Definition at line 245 of file Genetic_code_table.cpp.

Member Typedef Documentation

◆ TTransTablesById

Definition at line 272 of file Genetic_code_table.cpp.

Constructor & Destructor Documentation

◆ CGen_code_table_imp() [1/2]

CGen_code_table_imp::CGen_code_table_imp ( void  )

◆ CGen_code_table_imp() [2/2]

CGen_code_table_imp::CGen_code_table_imp ( CObjectIStream ois)

◆ ~CGen_code_table_imp()

CGen_code_table_imp::~CGen_code_table_imp ( void  )

Definition at line 473 of file Genetic_code_table.cpp.

Member Function Documentation

◆ GetCodeTable()

const CGenetic_code_table & CGen_code_table_imp::GetCodeTable ( void  )

Definition at line 604 of file Genetic_code_table.cpp.

References m_GcTable.

Referenced by CGen_code_table::GetCodeTable().

◆ GetNcbieaa() [1/2]

const string & CGen_code_table_imp::GetNcbieaa ( const CGenetic_code gc) const

Definition at line 621 of file Genetic_code_table.cpp.

References CGenetic_code::GetNcbieaa().

◆ GetNcbieaa() [2/2]

const string & CGen_code_table_imp::GetNcbieaa ( int  id) const

◆ GetSncbieaa() [1/2]

const string & CGen_code_table_imp::GetSncbieaa ( const CGenetic_code gc) const

Definition at line 639 of file Genetic_code_table.cpp.

References CGenetic_code::GetSncbieaa().

◆ GetSncbieaa() [2/2]

const string & CGen_code_table_imp::GetSncbieaa ( int  id) const

◆ GetTransTable() [1/2]

const CTrans_table & CGen_code_table_imp::GetTransTable ( const CGenetic_code gc)

◆ GetTransTable() [2/2]

const CTrans_table & CGen_code_table_imp::GetTransTable ( int  gc)

Member Data Documentation

◆ m_GcTable

CRef<CGenetic_code_table> CGen_code_table_imp::m_GcTable
private

◆ m_TransTablesById

TTransTablesById CGen_code_table_imp::m_TransTablesById
private

Definition at line 275 of file Genetic_code_table.cpp.

Referenced by GetTransTable().

◆ sm_GenCodeTblMemStr

const char* const CGen_code_table_imp::sm_GenCodeTblMemStr[]
staticprivate

Definition at line 278 of file Genetic_code_table.cpp.

Referenced by CGen_code_table_imp().


The documentation for this class was generated from the following file:
Modified on Fri Sep 20 14:58:19 2024 by modify_doxy.py rev. 669887